MDP0000134468 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000134468 T57328_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000134468 RRM 18 85

Links

Other RRM family RBPs
Other Malus x domestica RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.941
ppa019392m Prunus persica ppa019392m I 0.928
ppa018926m Prunus persica ppa018926m I 0.928
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.926
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.926
MDP0000233609 Malus x domestica MDP0000233609 I 0.926
29908.m006046 Ricinus communis 29908.m006046 I 0.926
PK15672.1 Cannabis sativa PK15672.1 I 0.913
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.912
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.899
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.897
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.897
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.870
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.841
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.841
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.838
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.826
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.826
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.826
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.824
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.812
mgf017214m Mimulus guttatus mgf017214m I 0.809
30076.m004440 Ricinus communis 30076.m004440 I 0.809
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
ppa009964m Prunus persica ppa009964m I 0.794
ppa009716m Prunus persica ppa009716m I 0.794
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.794
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.794
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.794
PK21213.1 Cannabis sativa PK21213.1 I 0.794
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.794
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
MDP0000138486 Malus x domestica MDP0000138486 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
PK14266.1 Cannabis sativa PK14266.1 I 0.779
CU179634_3 Medicago truncatula CU179634_3 I 0.779
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.779
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.779
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
ppa016222m Prunus persica ppa016222m I 0.779
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.768
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.768
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.765
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.750
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
ppa018603m Prunus persica ppa018603m I 0.739
MDP0000284454 Malus x domestica MDP0000284454 I 0.735
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
MDP0000184420 Malus x domestica MDP0000184420 I 0.735
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.721
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.721
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.721
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.721
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.721
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.706
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.706
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.706
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.706
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.706
PK17691.1 Cannabis sativa PK17691.1 N 0.706