LjSGA_018073.2 (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjSGA_018073.2 T57191_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.794
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_018073.2 RRM 24 91

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000548950 Malus x domestica MDP0000548950 I 0.971
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.971
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.971
MDP0000744398 Malus x domestica MDP0000744398 I 0.971
MDP0000488395 Malus x domestica MDP0000488395 I 0.956
ppa016222m Prunus persica ppa016222m I 0.956
30076.m004440 Ricinus communis 30076.m004440 I 0.941
PK14266.1 Cannabis sativa PK14266.1 I 0.941
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.941
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.941
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.926
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.926
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.926
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.926
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.912
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.899
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.884
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.882
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.870
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.868
mgf017214m Mimulus guttatus mgf017214m I 0.868
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.868
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.855
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.853
PK21213.1 Cannabis sativa PK21213.1 I 0.853
MDP0000118777 Malus x domestica MDP0000118777 I 0.841
MDP0000857317 Malus x domestica MDP0000857317 I 0.841
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.838
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.838
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.838
ppa018603m Prunus persica ppa018603m I 0.826
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.824
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.824
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.812
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.809
29908.m006046 Ricinus communis 29908.m006046 I 0.809
ppa009964m Prunus persica ppa009964m I 0.809
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.809
ppa009716m Prunus persica ppa009716m I 0.809
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.809
MDP0000134468 Malus x domestica MDP0000134468 I 0.809
MDP0000138486 Malus x domestica MDP0000138486 I 0.809
CU179634_3 Medicago truncatula CU179634_3 I 0.809
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.809
PK15672.1 Cannabis sativa PK15672.1 I 0.797
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.794
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.794
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.794
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.794
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.794
ppa018926m Prunus persica ppa018926m I 0.783
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.783
ppa019392m Prunus persica ppa019392m I 0.783
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.779
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.779
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.779
MDP0000233609 Malus x domestica MDP0000233609 I 0.779
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.768
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.768
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.754
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.750
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.750
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.750
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.750
MDP0000284454 Malus x domestica MDP0000284454 I 0.750
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.750
MDP0000184420 Malus x domestica MDP0000184420 I 0.750
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.750
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.750
SB03G041530 Sorghum bicolor Sb03g041530 I 0.750
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.750
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.750
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.739
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.739
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.739
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.739
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.735
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.735
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.735
PK17691.1 Cannabis sativa PK17691.1 N 0.735
29983.m003293 Ricinus communis 29983.m003293 I 0.735
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.735
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.735
30170.m013735 Ricinus communis 30170.m013735 I 0.735
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.725
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.721
ppa009564m Prunus persica ppa009564m I 0.721
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.721
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.721
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.721
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.721
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.721
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.721
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.706
MDP0000271231 Malus x domestica MDP0000271231 N 0.706
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.706
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.706
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.706
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.706
MDP0000181802 Malus x domestica MDP0000181802 N 0.706
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.706