ppa009964m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa009964m T58417_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.853
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009964m RRM 39 106

Links

Other RRM family RBPs
Other Prunus persica RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000138486 Malus x domestica MDP0000138486 I 0.956
mgf017214m Mimulus guttatus mgf017214m I 0.897
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.884
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.884
PK21213.1 Cannabis sativa PK21213.1 I 0.882
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.882
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.882
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.882
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.882
CU179634_3 Medicago truncatula CU179634_3 I 0.882
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.868
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.853
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.853
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.853
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.853
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.853
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.853
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.853
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.838
PK15672.1 Cannabis sativa PK15672.1 I 0.826
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.824
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.824
ppa009716m Prunus persica ppa009716m I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.824
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.809
MDP0000184420 Malus x domestica MDP0000184420 I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.809
30076.m004440 Ricinus communis 30076.m004440 I 0.809
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.809
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.809
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.797
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.797
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.794
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.794
SB04G030020 Sorghum bicolor Sb04g030020 I 0.794
ppa019392m Prunus persica ppa019392m I 0.783
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.783
ppa018926m Prunus persica ppa018926m I 0.783
MDP0000233609 Malus x domestica MDP0000233609 I 0.779
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.779
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.779
MDP0000284454 Malus x domestica MDP0000284454 I 0.779
ppa016222m Prunus persica ppa016222m I 0.779
PK14266.1 Cannabis sativa PK14266.1 I 0.779
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
ppa018603m Prunus persica ppa018603m I 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.768
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.768
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.768
29908.m006046 Ricinus communis 29908.m006046 I 0.765
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.765
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.765
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.765
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.765
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.765
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.765
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.765
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.754
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.754
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.754
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.754
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.750
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.750
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.739
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.735
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.735
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.735
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.735
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
SB01G038700 Sorghum bicolor Sb01g038700 I 0.721
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.721
SB03G041530 Sorghum bicolor Sb03g041530 I 0.721
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.721
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.721
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.710
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.710
30170.m013735 Ricinus communis 30170.m013735 I 0.706
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.706
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
mgf002440m Mimulus guttatus mgf002440m N 0.706
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.706
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.706
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.706