Glyma16g02220.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma16g02220.1 T52873_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma16g02220.1 RRM 26 93

Links

Other RRM family RBPs
Other Glycine max RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 1.000
MDP0000744398 Malus x domestica MDP0000744398 I 0.971
MDP0000548950 Malus x domestica MDP0000548950 I 0.971
30076.m004440 Ricinus communis 30076.m004440 I 0.971
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.971
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.971
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.971
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.956
ppa016222m Prunus persica ppa016222m I 0.956
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.956
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.956
MDP0000488395 Malus x domestica MDP0000488395 I 0.956
PK14266.1 Cannabis sativa PK14266.1 I 0.941
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.941
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.941
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.928
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.913
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.899
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.884
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
MDP0000857317 Malus x domestica MDP0000857317 I 0.855
MDP0000118777 Malus x domestica MDP0000118777 I 0.855
ppa018603m Prunus persica ppa018603m I 0.855
mgf017214m Mimulus guttatus mgf017214m I 0.853
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.853
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.853
PK21213.1 Cannabis sativa PK21213.1 I 0.838
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.838
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.824
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.824
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.824
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.824
ppa009716m Prunus persica ppa009716m I 0.824
CU179634_3 Medicago truncatula CU179634_3 I 0.824
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.824
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.824
MDP0000134468 Malus x domestica MDP0000134468 I 0.824
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.824
MDP0000138486 Malus x domestica MDP0000138486 I 0.824
ppa009964m Prunus persica ppa009964m I 0.824
PK15672.1 Cannabis sativa PK15672.1 I 0.812
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.809
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.809
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.809
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.809
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.809
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.797
ppa018926m Prunus persica ppa018926m I 0.797
ppa019392m Prunus persica ppa019392m I 0.797
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.797
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.794
MDP0000233609 Malus x domestica MDP0000233609 I 0.794
29908.m006046 Ricinus communis 29908.m006046 I 0.794
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.779
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.779
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.768
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.765
PK17691.1 Cannabis sativa PK17691.1 N 0.765
MDP0000184420 Malus x domestica MDP0000184420 I 0.765
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.765
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.754
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.754
30170.m013735 Ricinus communis 30170.m013735 I 0.750
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.750
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.739
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.739
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.739
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.739
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.735
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.735
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.735
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.735
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.735
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.735
SB03G041530 Sorghum bicolor Sb03g041530 I 0.735
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.725
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.721
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.721
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.721
29983.m003293 Ricinus communis 29983.m003293 I 0.721
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.706
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.706
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.706
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.706
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.706
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.706
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706
ppa009564m Prunus persica ppa009564m I 0.706
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.706
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.706
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.706
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.706
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.706