Glyma16g02120.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma16g02120.1 T52872_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma16g02120.1 RRM 19 87

Links

Other RRM family RBPs
Other Glycine max RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.971
MDP0000548950 Malus x domestica MDP0000548950 I 0.928
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.928
30076.m004440 Ricinus communis 30076.m004440 I 0.928
MDP0000744398 Malus x domestica MDP0000744398 I 0.928
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.928
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.928
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.928
ppa016222m Prunus persica ppa016222m I 0.913
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.913
MDP0000488395 Malus x domestica MDP0000488395 I 0.913
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.913
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.913
PK14266.1 Cannabis sativa PK14266.1 I 0.899
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.899
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.899
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.884
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.870
ppa018603m Prunus persica ppa018603m I 0.870
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.870
MDP0000118777 Malus x domestica MDP0000118777 I 0.841
MDP0000857317 Malus x domestica MDP0000857317 I 0.841
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.826
ppa009716m Prunus persica ppa009716m I 0.812
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.812
mgf017214m Mimulus guttatus mgf017214m I 0.812
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.812
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.812
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.812
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.797
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.797
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.797
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.797
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.797
PK21213.1 Cannabis sativa PK21213.1 I 0.797
PK15672.1 Cannabis sativa PK15672.1 I 0.797
ppa019392m Prunus persica ppa019392m I 0.783
ppa018926m Prunus persica ppa018926m I 0.783
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.783
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.783
MDP0000134468 Malus x domestica MDP0000134468 I 0.783
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
CU179634_3 Medicago truncatula CU179634_3 I 0.783
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.783
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.783
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.768
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.768
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.768
MDP0000138486 Malus x domestica MDP0000138486 I 0.754
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.754
ppa009964m Prunus persica ppa009964m I 0.754
MDP0000284454 Malus x domestica MDP0000284454 I 0.754
29908.m006046 Ricinus communis 29908.m006046 I 0.754
MDP0000184420 Malus x domestica MDP0000184420 I 0.754
MDP0000233609 Malus x domestica MDP0000233609 I 0.754
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.754
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.754
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.739
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.739
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.739
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.739
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.739
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.739
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.725
30170.m013735 Ricinus communis 30170.m013735 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.710
PK17691.1 Cannabis sativa PK17691.1 N 0.710
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.710
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.710
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.710
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.710
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.710
SB03G041530 Sorghum bicolor Sb03g041530 I 0.710
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.710
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.710