LOC_Os03g14190 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os03g14190 T44984_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g14190.1 RRM 10 77

Links

Other RRM family RBPs
Other Oryza sativa RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.779
ppa009716m Prunus persica ppa009716m I 0.765
ppa009964m Prunus persica ppa009964m I 0.765
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.765
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.750
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.750
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.750
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.750
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
30076.m004440 Ricinus communis 30076.m004440 I 0.750
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.750
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.750
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.750
MDP0000138486 Malus x domestica MDP0000138486 I 0.735
MDP0000744398 Malus x domestica MDP0000744398 I 0.735
MDP0000548950 Malus x domestica MDP0000548950 I 0.735
MDP0000488395 Malus x domestica MDP0000488395 I 0.735
MDP0000184420 Malus x domestica MDP0000184420 I 0.735
mgf017214m Mimulus guttatus mgf017214m I 0.735
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.735
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.735
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.735
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.735
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.721
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
ppa016222m Prunus persica ppa016222m I 0.721
PK14266.1 Cannabis sativa PK14266.1 I 0.721
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.721
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.721
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.721
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.721
CU179634_3 Medicago truncatula CU179634_3 I 0.721
MDP0000134468 Malus x domestica MDP0000134468 I 0.721
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
MDP0000284454 Malus x domestica MDP0000284454 I 0.721
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
MDP0000118777 Malus x domestica MDP0000118777 I 0.710
MDP0000857317 Malus x domestica MDP0000857317 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.706
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.706
PK21213.1 Cannabis sativa PK21213.1 I 0.706