MDP0000488395 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000488395 T57672_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000488395 RRM 22 89

Links

Other RRM family RBPs
Other Malus x domestica RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000548950 Malus x domestica MDP0000548950 I 0.985
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.985
MDP0000744398 Malus x domestica MDP0000744398 I 0.985
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.971
30076.m004440 Ricinus communis 30076.m004440 I 0.971
PK14266.1 Cannabis sativa PK14266.1 I 0.971
ppa016222m Prunus persica ppa016222m I 0.971
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.956
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.956
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.956
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.956
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.956
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.941
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.941
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.913
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.912
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.899
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.884
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.882
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.882
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.870
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.868
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
ppa018603m Prunus persica ppa018603m I 0.855
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.853
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.853
mgf017214m Mimulus guttatus mgf017214m I 0.853
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.838
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.838
PK21213.1 Cannabis sativa PK21213.1 I 0.838
MDP0000118777 Malus x domestica MDP0000118777 I 0.826
MDP0000857317 Malus x domestica MDP0000857317 I 0.826
ppa009716m Prunus persica ppa009716m I 0.824
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.824
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.809
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.797
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.794
ppa009964m Prunus persica ppa009964m I 0.794
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.794
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.794
MDP0000138486 Malus x domestica MDP0000138486 I 0.794
29908.m006046 Ricinus communis 29908.m006046 I 0.794
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.794
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.794
CU179634_3 Medicago truncatula CU179634_3 I 0.794
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.794
PK15672.1 Cannabis sativa PK15672.1 I 0.783
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.779
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.779
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.779
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.779
ppa019392m Prunus persica ppa019392m I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.768
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.765
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
MDP0000233609 Malus x domestica MDP0000233609 I 0.765
MDP0000184420 Malus x domestica MDP0000184420 I 0.765
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.754
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.750
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.750
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.750
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.750
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.750
29983.m003293 Ricinus communis 29983.m003293 I 0.750
SB03G041530 Sorghum bicolor Sb03g041530 I 0.750
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.750
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.750
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.739
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.735
30170.m013735 Ricinus communis 30170.m013735 I 0.735
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.735
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.735
PK17691.1 Cannabis sativa PK17691.1 N 0.735
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.721
ppa009564m Prunus persica ppa009564m I 0.721
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.721
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.721
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.721
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.721
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.721
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.721
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.721
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.721
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.721
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.710
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.710
MDP0000181802 Malus x domestica MDP0000181802 N 0.706
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.706
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.706
MDP0000271231 Malus x domestica MDP0000271231 N 0.706
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.706
mgf016660m Mimulus guttatus mgf016660m I 0.706
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.706
29923.m000811 Ricinus communis 29923.m000811 I 0.706
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.706