MDP0000118777 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000118777 T57295_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000118777 RRM 22 90

Links

Other RRM family RBPs
Other Malus x domestica RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000857317 Malus x domestica MDP0000857317 I 1.000
ppa018603m Prunus persica ppa018603m I 0.899
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.855
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.855
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.841
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.841
MDP0000744398 Malus x domestica MDP0000744398 I 0.841
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.841
MDP0000548950 Malus x domestica MDP0000548950 I 0.841
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.841
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.826
30076.m004440 Ricinus communis 30076.m004440 I 0.826
ppa016222m Prunus persica ppa016222m I 0.826
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.826
MDP0000488395 Malus x domestica MDP0000488395 I 0.826
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.812
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.812
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.812
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.812
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.812
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.812
PK14266.1 Cannabis sativa PK14266.1 I 0.812
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.797
mgf017214m Mimulus guttatus mgf017214m I 0.797
PK21213.1 Cannabis sativa PK21213.1 I 0.783
ppa009964m Prunus persica ppa009964m I 0.768
ppa009716m Prunus persica ppa009716m I 0.768
MDP0000138486 Malus x domestica MDP0000138486 I 0.768
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.768
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.768
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.768
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.768
PK15672.1 Cannabis sativa PK15672.1 I 0.768
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.754
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.754
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.754
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.754
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.754
CU179634_3 Medicago truncatula CU179634_3 I 0.754
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.754
ppa019392m Prunus persica ppa019392m I 0.754
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.754
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.754
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.754
ppa018926m Prunus persica ppa018926m I 0.754
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.754
MDP0000134468 Malus x domestica MDP0000134468 I 0.754
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.739
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.739
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.739
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.739
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.739
MDP0000233609 Malus x domestica MDP0000233609 I 0.739
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.739
29908.m006046 Ricinus communis 29908.m006046 I 0.739
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.739
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.725
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.725
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
MDP0000284454 Malus x domestica MDP0000284454 I 0.710
MDP0000184420 Malus x domestica MDP0000184420 I 0.710
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.710
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.710
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
PK17691.1 Cannabis sativa PK17691.1 N 0.710