Medtr3g122940 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g122940 T54486_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g122940.1 RRM 18 86
Medtr3g122940.2 RRM 18 86

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.841
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.826
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.812
30076.m004440 Ricinus communis 30076.m004440 I 0.797
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.797
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.797
PK14266.1 Cannabis sativa PK14266.1 I 0.797
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.797
ppa018603m Prunus persica ppa018603m I 0.783
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.783
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.783
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.783
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.768
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.768
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.768
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.768
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.768
MDP0000488395 Malus x domestica MDP0000488395 I 0.768
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.768
MDP0000548950 Malus x domestica MDP0000548950 I 0.768
MDP0000744398 Malus x domestica MDP0000744398 I 0.768
PK15672.1 Cannabis sativa PK15672.1 I 0.768
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
ppa016222m Prunus persica ppa016222m I 0.754
ppa009964m Prunus persica ppa009964m I 0.739
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.739
PK17691.1 Cannabis sativa PK17691.1 N 0.739
mgf017214m Mimulus guttatus mgf017214m I 0.725
MDP0000138486 Malus x domestica MDP0000138486 I 0.725
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.725
ppa018926m Prunus persica ppa018926m I 0.725
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.725
ppa019392m Prunus persica ppa019392m I 0.725
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.710
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.710
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.710
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.710
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.710
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.710
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
PK21213.1 Cannabis sativa PK21213.1 I 0.710
MDP0000134468 Malus x domestica MDP0000134468 I 0.710
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.710
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.710
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.710