29983.m003293 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29983.m003293 T48725_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
29983.m003293 RRM 21 85

Links

Other RRM family RBPs
Other Ricinus communis RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.831
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.821
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.815
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.791
MDP0000181802 Malus x domestica MDP0000181802 N 0.785
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.785
MDP0000271231 Malus x domestica MDP0000271231 N 0.785
ppa009564m Prunus persica ppa009564m I 0.785
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.785
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.776
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.776
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.769
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.769
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.769
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.769
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.769
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.769
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.769
30170.m013735 Ricinus communis 30170.m013735 I 0.769
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.769
PK14266.1 Cannabis sativa PK14266.1 I 0.765
mgf002440m Mimulus guttatus mgf002440m N 0.754
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.754
SB03G046430 Sorghum bicolor Sb03g046430 N 0.754
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
ppa009716m Prunus persica ppa009716m I 0.750
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
MDP0000548950 Malus x domestica MDP0000548950 I 0.750
MDP0000744398 Malus x domestica MDP0000744398 I 0.750
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.738
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.738
SB03G041530 Sorghum bicolor Sb03g041530 I 0.738
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.738
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.738
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.738
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.738
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.738
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.735
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.735
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.735
30076.m004440 Ricinus communis 30076.m004440 I 0.735
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.735
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.735
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.735
PK21213.1 Cannabis sativa PK21213.1 I 0.731
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.723
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.723
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.723
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.723
mgf017214m Mimulus guttatus mgf017214m I 0.721
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.721
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.721
MDP0000284454 Malus x domestica MDP0000284454 I 0.721
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.721
MDP0000138486 Malus x domestica MDP0000138486 I 0.716
CU179634_3 Medicago truncatula CU179634_3 I 0.716
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.706
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.706
ppa026384m Prunus persica ppa026384m I 0.706
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.706
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.706