XP_001202981.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001202981.1 T58990_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.719
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.712
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.712
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.712
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.712
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.712
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.712
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.712
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001202981.1 RRM 2 58
XP_001202981.1 RRM 159 225

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 1.000
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.798
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.786
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.755
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.755
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.748
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.742
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.741
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.741
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.741
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.734
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.734
GH24608 Drosophila grimshawi FBgn0132064 I 0.727
GK25839 Drosophila willistoni FBgn0227798 I 0.727
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.727
AAEL014167 Aedes aegypti AAEL014167 I 0.727
AAEL002980 Aedes aegypti AAEL002980 I 0.727
snf Drosophila mojavensis FBgn0069598 I 0.727
GJ16850 Drosophila virilis FBgn0204029 I 0.727
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.719
GG18748 Drosophila erecta FBgn0110957 I 0.719
GF21334 Drosophila ananassae FBgn0098336 I 0.719
snf Drosophila melanogaster FBgn0003449 D 0.719
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.719
GM12396 Drosophila sechellia FBgn0167333 I 0.719
AGAP011637 Anopheles gambiae AGAP011637 I 0.719
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.719
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.719
GE16390 Drosophila yakuba FBgn0233919 I 0.719
GL14287 Drosophila persimilis FBgn0151892 I 0.719
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.718
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.712
SNRPA Sus scrofa ENSSSCG00000002998 I 0.712
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.712
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.712
LOC100068274 Equus caballus ENSECAG00000013141 I 0.712
SNRPA Felis catus ENSFCAG00000016209 I 0.712
SNRPA Homo sapiens ENSG00000077312 D 0.712
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.712
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.712
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.712
SNRPA Canis familiaris ENSCAFG00000005091 I 0.712
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.712
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.712
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.712
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.712
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.712
SNRPA Procavia capensis ENSPCAG00000012325 I 0.712
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.712
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.712
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.712
Snrpa Mus musculus ENSMUSG00000061479 I 0.712
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.712
snrpa Danio rerio ENSDARG00000018890 I 0.705
SNRPA Oryzias latipes ENSORLG00000006536 I 0.705
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.701