LOC_Os04g04000 (Oryza sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LOC_Os04g04000 T62229_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g04000.1 YTH 520 610
LOC_Os04g04000.2 YTH 520 610

Links

Other YTH family RBPs
Other Oryza sativa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 1.000
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.857
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.846
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.846
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.846
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.846
SB09G000580 Sorghum bicolor Sb09g000580 N 0.846
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.758
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.758
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.758
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.750
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
29765.m000746 Ricinus communis 29765.m000746 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.736
mgf019846m Mimulus guttatus mgf019846m N 0.736
mgf014829m Mimulus guttatus mgf014829m N 0.736
mgf001716m Mimulus guttatus mgf001716m N 0.736
ppa003557m Prunus persica ppa003557m N 0.736
MDP0000256033 Malus x domestica MDP0000256033 N 0.736
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.728
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
MDP0000488248 Malus x domestica MDP0000488248 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703