BRADI5G01317 (Brachypodium distachyon)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BRADI5G01317 T61959_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI5G01317.1 YTH 550 640

Links

Other YTH family RBPs
Other Brachypodium distachyon RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.989
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.890
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.890
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.846
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.846
SB09G000580 Sorghum bicolor Sb09g000580 N 0.835
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.835
SB01G008170 Sorghum bicolor Sb01g008170 N 0.769
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.769
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.769
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.758
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.758
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.758
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.758
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.758
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.758
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.758
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.758
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.758
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.758
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.758
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.758
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.758
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.758
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.758
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.758
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.758
MDP0000718677 Malus x domestica MDP0000718677 N 0.758
mgf009938m Mimulus guttatus mgf009938m N 0.758
mgf013853m Mimulus guttatus mgf013853m N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
MDP0000129009 Malus x domestica MDP0000129009 N 0.758
PK23716.1 Cannabis sativa PK23716.1 N 0.758
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.758
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.758
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.747
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.747
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.747
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.747
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.747
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.747
29765.m000746 Ricinus communis 29765.m000746 N 0.747
ppa003557m Prunus persica ppa003557m N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.747
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.736
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
mgf001716m Mimulus guttatus mgf001716m N 0.736
mgf014829m Mimulus guttatus mgf014829m N 0.736
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.736
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.736
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.736
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.736
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.736
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.736
SB01G005500 Sorghum bicolor Sb01g005500 N 0.736
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.736
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.728
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.725
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.717
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
SB07G024500 Sorghum bicolor Sb07g024500 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.703
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.703
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703