BRADI3G06027 (Brachypodium distachyon)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BRADI3G06027 T61955_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G06027.1 YTH 492 582

Links

Other YTH family RBPs
Other Brachypodium distachyon RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.989
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.901
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.901
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.857
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.857
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.846
SB09G000580 Sorghum bicolor Sb09g000580 N 0.846
mgf019846m Mimulus guttatus mgf019846m N 0.769
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.769
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.758
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.758
SB01G008170 Sorghum bicolor Sb01g008170 N 0.758
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.758
29765.m000746 Ricinus communis 29765.m000746 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.758
ppa003557m Prunus persica ppa003557m N 0.758
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.758
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.758
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.758
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.758
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.758
PK26094.1 Cannabis sativa PK26094.1 N 0.758
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.747
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.747
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.747
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.747
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.747
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.747
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.747
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.747
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.747
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.747
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.747
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.747
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.747
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.747
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.747
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.747
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.747
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.747
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.747
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.747
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.747
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.747
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.747
PK23716.1 Cannabis sativa PK23716.1 N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.747
MDP0000718677 Malus x domestica MDP0000718677 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.728
SB01G005500 Sorghum bicolor Sb01g005500 N 0.725
SB07G024500 Sorghum bicolor Sb07g024500 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.725
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.717
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.703
MDP0000248088 Malus x domestica MDP0000248088 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000552419 Malus x domestica MDP0000552419 N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.703