pspc1 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSGACG00000014901 T080765_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
pspc1
M11723_2.00		 Gasterosteus aculeatus NGURGKKK JPLE
Sasse et al.(2025)
RM_Gas.acu_ENSGACG00000014901 		0.123

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.296
(11.91%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.123
(73.27%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000019668 RRM 85 162
ENSGACP00000019668 RRM 159 224
ENSGACP00000019670 RRM 43 120
ENSGACP00000019670 RRM 117 182

RNA contacting residues

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.826
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.801
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.785
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.777
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.777
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.771
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.759
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.757
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.743
pspc1 Danio rerio ENSDARG00000006621 I 0.743
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.735
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.715
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.715
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.715
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.715
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.715
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.715
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.715
Pspc1 Mus musculus ENSMUSG00000021938 I 0.715
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.715
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.715
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.715
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.715
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.715
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.715
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.715
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.715
PSPC1 Sorex araneus ENSSARG00000000888 I 0.715
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.715
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.715
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.715
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.715
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.715
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.715
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.715
PSPC1 Felis catus ENSFCAG00000027841 I 0.715
PSPC1 Homo sapiens ENSG00000121390 I 0.715
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.708
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.708
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.708
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.708
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.708
PSPC1 Bos taurus ENSBTAG00000003934 I 0.708
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.708
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.708
PSPC1 Gallus gallus ENSGALG00000017142 I 0.707
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.707
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.707
Aan_R001274 Calypte anna Aan_R001274 I 0.707
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.707
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.707
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.707
Tal_R009732 Tyto alba Tal_R009732 I 0.707
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.707
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.707
SFPQ Gallus gallus ENSGALG00000002514 I 0.703
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.701
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.701
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.701