pspc1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 XB-GENE-492866 T129563_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
pspc1
M29038_2.00		 Xenopus tropicalis NGURGKKU JPLE
Sasse et al.(2025)
RM_Xen.tro_XB-GENE-492866 		0.035

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.776
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.776
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.776
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.776
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.716
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.035
(90.06%)

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002938004 RRM 73 150
XP_002938004 RRM 147 215

RNA contacting residues

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.905
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.905
PSPC1 Gallus gallus ENSGALG00000017142 I 0.905
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.905
Aan_R001274 Calypte anna Aan_R001274 I 0.905
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.905
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.905
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.905
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.905
Tal_R009732 Tyto alba Tal_R009732 I 0.905
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.891
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.886
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.878
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.878
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.878
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.878
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.878
PSPC1 Felis catus ENSFCAG00000027841 I 0.878
PSPC1 Homo sapiens ENSG00000121390 I 0.878
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.878
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.878
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.878
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.878
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.878
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.878
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.878
Pspc1 Mus musculus ENSMUSG00000021938 I 0.878
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.878
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.878
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.878
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.878
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.878
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.878
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.878
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.878
PSPC1 Sorex araneus ENSSARG00000000888 I 0.878
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.878
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.878
PSPC1 Bos taurus ENSBTAG00000003934 I 0.871
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.871
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.871
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.871
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.871
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.871
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.871
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.871
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.857
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.844
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.810
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.803
pspc1 Danio rerio ENSDARG00000006621 I 0.803
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.796
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.796
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.789
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.789
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.782
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.782
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.782
Aan_R015520 Calypte anna Aan_R015520 I 0.782
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.782
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.782
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.782
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.782
Tal_R009770 Tyto alba Tal_R009770 I 0.782
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.776
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.776
SFPQ Bos taurus ENSBTAG00000016328 I 0.776
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.776
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.776
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.776
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.776
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.776
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.776
SFPQ Echinops telfairi ENSETEG00000001095 I 0.776
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.776
SFPQ Homo sapiens ENSG00000116560 D 0.776
SFPQ Gallus gallus ENSGALG00000002514 I 0.776
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.776
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.776
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.776
Sfpq Mus musculus ENSMUSG00000028820 I 0.776
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.776
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.776
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.776
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.776
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.776
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.776
SFPQ Procavia capensis ENSPCAG00000006164 I 0.776
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.776
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.776
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.776
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.776
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.776
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.776
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.776
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.776
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.776
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.773
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.772
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.772
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.769
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.769
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.769
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.764
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.762
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.762
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.762
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.762
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.755
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.755
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.755
sfpq Oryzias latipes ENSORLG00000007459 I 0.755
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.750
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.748
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.748
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.743
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.741
nono Danio rerio ENSDARG00000020482 I 0.741
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.741
ENSCAFG00000007359 Canis familiaris ENSCAFG00000007359 I 0.736
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.736
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.736
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.735
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.735
nono.L Xenopus laevis XB-GENE-1002501 I 0.735
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.730
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.730
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.728
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.723
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.723
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.721
NONO Anolis carolinensis ENSACAG00000015026 I 0.716
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.716
NONO Bos taurus ENSBTAG00000012152 I 0.716
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.716
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.716
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.716
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.716
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.716
NONO Equus caballus ENSECAG00000008502 I 0.716
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.716
NONO Felis catus ENSFCAG00000014807 I 0.716
NONO Homo sapiens ENSG00000147140 D 0.716
NONO Gorilla gorilla ENSGGOG00000006194 I 0.716
NONO Loxodonta africana ENSLAFG00000013422 I 0.716
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.716
NONO Microcebus murinus ENSMICG00000000232 I 0.716
NONO Myotis lucifugus ENSMLUG00000002489 I 0.716
NONO Macaca mulatta ENSMMUG00000020481 I 0.716
NONO Monodelphis domestica ENSMODG00000004445 I 0.716
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.716
Nono Mus musculus ENSMUSG00000031311 I 0.716
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.716
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.716
NONO Otolemur garnettii ENSOGAG00000004834 I 0.716
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.716
NONO Procavia capensis ENSPCAG00000002541 I 0.716
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.716
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.716
NONO Pan troglodytes ENSPTRG00000022010 I 0.716
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.716
Nono Rattus norvegicus ENSRNOG00000003689 I 0.716
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.716
NONO Sus scrofa ENSSSCG00000023245 I 0.716
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.716
NONO Tursiops truncatus ENSTTRG00000009605 I 0.716
NONO Vicugna pacos ENSVPAG00000002272 I 0.716
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.716
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.716
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.716
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.716
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.716
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.714
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.714
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.709
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.709
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.709
NONO Gallus gallus ENSGALG00000005507 I 0.709
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.709
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.709
NONO Sorex araneus ENSSARG00000007959 I 0.709
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.709
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.709
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.709
Tal_R004102 Tyto alba Tal_R004102 I 0.709
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.709
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.707
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.704
nono Xenopus tropicalis XB-GENE-1002494 I 0.703