ENSXMAG00000007929 (Xiphophorus maculatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSXMAG00000007929 T089129_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSXMAG00000007929
M29171_2.00		 Xiphophorus maculatus NGURGKKU JPLE
Sasse et al.(2025)
RM_Xip.mac_ENSXMAG00000007929 		0.092

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.716
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.716
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.716
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.275
(14.27%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.092
(76.43%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000007957 RRM 83 160
ENSXMAP00000007957 RRM 157 226

RNA contacting residues

Links

Other RRM family RBPs
Other Xiphophorus maculatus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.980
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.831
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.811
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.777
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.764
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.757
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.757
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.750
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.743
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.732
Aan_R001274 Calypte anna Aan_R001274 I 0.730
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.730
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.730
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.730
Tal_R009732 Tyto alba Tal_R009732 I 0.730
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.730
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.730
PSPC1 Gallus gallus ENSGALG00000017142 I 0.730
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.730
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.730
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.723
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.723
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.723
pspc1 Danio rerio ENSDARG00000006621 I 0.723
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.723
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.723
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.718
Aan_R015520 Calypte anna Aan_R015520 I 0.716
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.716
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.716
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.716
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.716
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.716
Tal_R009770 Tyto alba Tal_R009770 I 0.716
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.716
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.716
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.716
SFPQ Bos taurus ENSBTAG00000016328 I 0.716
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.716
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.716
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.716
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.716
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.716
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.716
SFPQ Echinops telfairi ENSETEG00000001095 I 0.716
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.716
SFPQ Homo sapiens ENSG00000116560 D 0.716
SFPQ Gallus gallus ENSGALG00000002514 I 0.716
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.716
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.716
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.716
Sfpq Mus musculus ENSMUSG00000028820 I 0.716
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.716
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.716
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.716
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.716
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.716
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.716
SFPQ Procavia capensis ENSPCAG00000006164 I 0.716
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.716
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.716
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.716
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.716
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.716
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.716
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.716
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.716
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.711
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.709
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.709
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.709
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.709
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.709
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.709
PSPC1 Felis catus ENSFCAG00000027841 I 0.709
PSPC1 Homo sapiens ENSG00000121390 I 0.709
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.709
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.709
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.709
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.709
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.709
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.709
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.709
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.709
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.709
Pspc1 Mus musculus ENSMUSG00000021938 I 0.709
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.709
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.709
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.709
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.709
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.709
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.709
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.709
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.709
PSPC1 Sorex araneus ENSSARG00000000888 I 0.709
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.709
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.709
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.709
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.703
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.703
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.703
PSPC1 Bos taurus ENSBTAG00000003934 I 0.703
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.703
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.703
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.703
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.703
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.703
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.703
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.703
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.703