ENSPFOG00000003362 (Poecilia formosa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSPFOG00000003362 T085764_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSPFOG00000003362
M22212_2.00		 Poecilia formosa NGURGKKU JPLE
Sasse et al.(2025)
RM_Poe.for_ENSPFOG00000003362 		0.083

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.730
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.730
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.730
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.269
(15.15%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.083
(77.44%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000003336 RRM 78 155
ENSPFOP00000003336 RRM 152 221

RNA contacting residues

Links

Other RRM family RBPs
Other Poecilia formosa RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.980
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.838
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.818
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.777
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.764
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.764
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.757
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.757
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.750
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.745
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.743
Aan_R001274 Calypte anna Aan_R001274 I 0.743
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.743
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.743
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.743
Tal_R009732 Tyto alba Tal_R009732 I 0.743
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.743
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.743
PSPC1 Gallus gallus ENSGALG00000017142 I 0.743
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.743
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.736
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.736
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.736
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.736
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.732
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.730
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.730
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.730
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.730
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.730
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.730
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.730
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.730
Aan_R015520 Calypte anna Aan_R015520 I 0.730
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.730
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.730
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.730
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.730
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.730
Tal_R009770 Tyto alba Tal_R009770 I 0.730
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.730
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.730
SFPQ Bos taurus ENSBTAG00000016328 I 0.730
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.730
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.730
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.730
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.730
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.730
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.730
SFPQ Echinops telfairi ENSETEG00000001095 I 0.730
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.730
SFPQ Homo sapiens ENSG00000116560 D 0.730
SFPQ Gallus gallus ENSGALG00000002514 I 0.730
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.730
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.730
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.730
Sfpq Mus musculus ENSMUSG00000028820 I 0.730
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.730
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.730
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.730
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.730
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.730
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.730
SFPQ Procavia capensis ENSPCAG00000006164 I 0.730
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.723
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.723
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.723
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.723
PSPC1 Sorex araneus ENSSARG00000000888 I 0.723
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.723
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.723
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.723
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.723
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.723
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.723
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.723
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.723
pspc1 Danio rerio ENSDARG00000006621 I 0.723
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.723
PSPC1 Felis catus ENSFCAG00000027841 I 0.723
PSPC1 Homo sapiens ENSG00000121390 I 0.723
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.723
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.723
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.723
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.723
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.723
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.723
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.723
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.723
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.723
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.723
Pspc1 Mus musculus ENSMUSG00000021938 I 0.723
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.723
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.723
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.723
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.723
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.716
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.716
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.716
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.716
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.716
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.716
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.716
PSPC1 Bos taurus ENSBTAG00000003934 I 0.716
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.716
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.716
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.716
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.716
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.711
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.709
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.704
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.703