ENSGMOG00000015074 (Gadus morhua)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSGMOG00000015074 T081392_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSGMOG00000015074
M11450_2.00		 Gadus morhua NGURGKKB JPLE
Sasse et al.(2025)
RM_Gad.mor_ENSGMOG00000015074 		0.055

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.721
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.721
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.721
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.297
(10.21%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.055
(86.43%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000016139 RRM 88 165
ENSGMOP00000016139 RRM 162 228

RNA contacting residues

Links

Other RRM family RBPs
Other Gadus morhua RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.876
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.862
pspc1 Danio rerio ENSDARG00000006621 I 0.862
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.844
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.837
Aan_R001274 Calypte anna Aan_R001274 I 0.837
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.837
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.837
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.837
Tal_R009732 Tyto alba Tal_R009732 I 0.837
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.837
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.837
PSPC1 Gallus gallus ENSGALG00000017142 I 0.837
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.834
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.834
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.834
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.834
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.834
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.834
Pspc1 Mus musculus ENSMUSG00000021938 I 0.834
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.834
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.834
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.834
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.834
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.834
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.834
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.834
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.834
PSPC1 Sorex araneus ENSSARG00000000888 I 0.834
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.834
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.834
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.834
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.834
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.834
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.834
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.834
PSPC1 Felis catus ENSFCAG00000027841 I 0.834
PSPC1 Homo sapiens ENSG00000121390 I 0.834
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.834
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.828
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.828
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.828
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.828
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.828
PSPC1 Bos taurus ENSBTAG00000003934 I 0.828
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.828
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.828
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.823
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.819
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.803
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.774
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.772
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.762
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.759
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.755
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.755
nono Danio rerio ENSDARG00000020482 I 0.752
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.747
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.745
SFPQ Gallus gallus ENSGALG00000002514 I 0.745
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.743
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.741
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.741
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.738
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.735
Aan_R015520 Calypte anna Aan_R015520 I 0.735
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.735
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.735
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.735
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.735
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.735
Tal_R009770 Tyto alba Tal_R009770 I 0.735
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.735
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.732
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.730
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.728
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.728
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.728
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.728
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.728
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.728
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.728
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.728
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.727
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.725
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.724
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.724
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.721
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.721
Sfpq Mus musculus ENSMUSG00000028820 I 0.721
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.721
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.721
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.721
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.721
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.721
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.721
SFPQ Procavia capensis ENSPCAG00000006164 I 0.721
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.721
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.721
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.721
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.721
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.721
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.721
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.721
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.721
SFPQ Bos taurus ENSBTAG00000016328 I 0.721
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.721
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.721
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.721
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.721
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.721
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.721
SFPQ Echinops telfairi ENSETEG00000001095 I 0.721
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.721
SFPQ Homo sapiens ENSG00000116560 D 0.721
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.721
nono Takifugu rubripes ENSTRUG00000005554 I 0.716
sfpq Oryzias latipes ENSORLG00000007459 I 0.715
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.714
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.712
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.709
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.709
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.707
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.707
ENSCAFG00000007359 Canis familiaris ENSCAFG00000007359 I 0.705
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.703
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.703
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.701