ENSLACG00000010762 (Latimeria chalumnae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSLACG00000010762 T081535_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSLACG00000010762
M13708_2.00		 Latimeria chalumnae NGURGUKK JPLE
Sasse et al.(2025)
RM_Lat.cha_ENSLACG00000010762 		0.052

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.762
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.762
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.762
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.762
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.052
(91.70%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000012226 RRM 80 157
ENSLACP00000012226 RRM 154 222

RNA contacting residues

Links

Other RRM family RBPs
Other Latimeria chalumnae RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.905
Aan_R001274 Calypte anna Aan_R001274 I 0.905
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.905
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.905
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.905
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.905
Tal_R009732 Tyto alba Tal_R009732 I 0.905
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.905
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.905
PSPC1 Gallus gallus ENSGALG00000017142 I 0.905
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.891
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.879
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.871
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.871
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.871
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.871
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.871
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.871
Pspc1 Mus musculus ENSMUSG00000021938 I 0.871
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.871
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.871
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.871
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.871
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.871
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.871
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.871
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.871
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.871
PSPC1 Sorex araneus ENSSARG00000000888 I 0.871
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.871
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.871
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.871
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.871
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.871
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.871
PSPC1 Bos taurus ENSBTAG00000003934 I 0.871
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.871
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.871
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.871
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.871
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.871
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.871
PSPC1 Felis catus ENSFCAG00000027841 I 0.871
PSPC1 Homo sapiens ENSG00000121390 I 0.871
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.871
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.864
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.857
pspc1 Danio rerio ENSDARG00000006621 I 0.816
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.810
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.803
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.803
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.779
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.776
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.776
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.770
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.769
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.769
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.762
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.762
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.762
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.762
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.762
Sfpq Mus musculus ENSMUSG00000028820 I 0.762
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.762
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.762
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.762
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.762
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.762
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.762
SFPQ Procavia capensis ENSPCAG00000006164 I 0.762
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.762
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.762
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.762
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.762
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.762
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.762
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.762
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.762
Aan_R015520 Calypte anna Aan_R015520 I 0.762
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.762
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.762
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.762
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.762
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.762
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.762
Tal_R009770 Tyto alba Tal_R009770 I 0.762
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.762
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.762
SFPQ Bos taurus ENSBTAG00000016328 I 0.762
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.762
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.762
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.762
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.762
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.762
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.762
SFPQ Echinops telfairi ENSETEG00000001095 I 0.762
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.762
SFPQ Homo sapiens ENSG00000116560 D 0.762
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.762
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.755
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.755
SFPQ Gallus gallus ENSGALG00000002514 I 0.755
sfpq Oryzias latipes ENSORLG00000007459 I 0.755
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.753
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.748
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.748
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.748
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.748
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.748
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.745
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.741
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.741
nono Danio rerio ENSDARG00000020482 I 0.741
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.730
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.730
ENSCAFG00000007359 Canis familiaris ENSCAFG00000007359 I 0.730
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.728
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.728
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.724
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.723
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.723
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.722
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.721
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.721
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.714
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.711
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.709
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.709
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.707
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.703
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.701
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.701