ENSORLG00000004232 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSORLG00000004232 T085174_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSORLG00000004232
M19654_2.00		 Oryzias latipes NGUDGKKU JPLE
Sasse et al.(2025)
RM_Ory.lat_ENSORLG00000004232 		0.084

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.707
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.707
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.707
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.285
(13.30%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.084
(84.65%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000005300 RRM 33 110
ENSORLP00000005300 RRM 107 174

RNA contacting residues

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.842
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.838
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.831
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.801
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.801
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.795
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.788
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.788
pspc1 Danio rerio ENSDARG00000006621 I 0.781
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.776
Aan_R001274 Calypte anna Aan_R001274 I 0.776
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.776
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.776
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.776
Tal_R009732 Tyto alba Tal_R009732 I 0.776
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.776
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.776
PSPC1 Gallus gallus ENSGALG00000017142 I 0.776
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.776
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.774
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.762
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.755
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.753
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.753
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.753
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.753
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.753
PSPC1 Sorex araneus ENSSARG00000000888 I 0.753
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.753
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.753
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.753
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.753
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.753
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.753
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.753
PSPC1 Felis catus ENSFCAG00000027841 I 0.753
PSPC1 Homo sapiens ENSG00000121390 I 0.753
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.753
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.753
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.753
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.753
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.753
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.753
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.753
Pspc1 Mus musculus ENSMUSG00000021938 I 0.753
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.753
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.753
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.753
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.752
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.747
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.747
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.747
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.747
PSPC1 Bos taurus ENSBTAG00000003934 I 0.747
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.747
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.747
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.747
SFPQ Gallus gallus ENSGALG00000002514 I 0.719
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.719
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.714
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.714
Aan_R015520 Calypte anna Aan_R015520 I 0.714
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.714
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.714
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.714
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.714
Tal_R009770 Tyto alba Tal_R009770 I 0.714
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.714
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.714
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.714
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.714
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.707
SFPQ Procavia capensis ENSPCAG00000006164 I 0.707
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.707
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.707
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.707
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.707
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.707
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.707
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.707
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.707
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.707
SFPQ Bos taurus ENSBTAG00000016328 I 0.707
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.707
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.707
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.707
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.707
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.707
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.707
SFPQ Echinops telfairi ENSETEG00000001095 I 0.707
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.707
SFPQ Homo sapiens ENSG00000116560 D 0.707
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.707
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.707
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.707
Sfpq Mus musculus ENSMUSG00000028820 I 0.707
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.707
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.707
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.707
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.707
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.707
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.701
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.701
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.701
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.701