ENSAMXG00000015717 (Astyanax mexicanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSAMXG00000015717 T077050_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSAMXG00000015717
M03676_2.00		 Astyanax mexicanus NGURGKKU JPLE
Sasse et al.(2025)
RM_Ast.mex_ENSAMXG00000015717 		0.059

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.741
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.741
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.741
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.059
(86.75%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000016176 RRM 80 157
ENSAMXP00000016176 RRM 154 219

RNA contacting residues

Links

Other RRM family RBPs
Other Astyanax mexicanus RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.896
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.862
pspc1 Danio rerio ENSDARG00000006621 I 0.861
PSPC1 Bos taurus ENSBTAG00000003934 I 0.826
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.826
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.826
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.826
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.826
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.826
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.826
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.819
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.819
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.819
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.819
PSPC1 Felis catus ENSFCAG00000027841 I 0.819
PSPC1 Homo sapiens ENSG00000121390 I 0.819
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.819
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.819
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.819
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.819
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.819
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.819
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.819
Pspc1 Mus musculus ENSMUSG00000021938 I 0.819
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.819
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.819
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.819
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.819
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.819
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.819
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.819
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.819
PSPC1 Sorex araneus ENSSARG00000000888 I 0.819
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.819
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.819
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.819
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.812
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.810
PSPC1 Gallus gallus ENSGALG00000017142 I 0.810
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.810
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.810
Aan_R001274 Calypte anna Aan_R001274 I 0.810
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.810
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.810
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.810
Tal_R009732 Tyto alba Tal_R009732 I 0.810
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.810
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.806
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.803
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.801
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.796
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.792
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.778
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.771
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.764
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.764
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.764
SFPQ Gallus gallus ENSGALG00000002514 I 0.752
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.748
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.748
nono Danio rerio ENSDARG00000020482 I 0.743
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.741
SFPQ Bos taurus ENSBTAG00000016328 I 0.741
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.741
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.741
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.741
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.741
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.741
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.741
SFPQ Echinops telfairi ENSETEG00000001095 I 0.741
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.741
SFPQ Homo sapiens ENSG00000116560 D 0.741
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.741
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.741
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.741
Sfpq Mus musculus ENSMUSG00000028820 I 0.741
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.741
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.741
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.741
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.741
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.741
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.741
SFPQ Procavia capensis ENSPCAG00000006164 I 0.741
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.741
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.741
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.741
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.741
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.741
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.741
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.741
Aan_R015520 Calypte anna Aan_R015520 I 0.741
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.741
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.741
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.741
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.741
Tal_R009770 Tyto alba Tal_R009770 I 0.741
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.741
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.741
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.740
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.735
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.735
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.735
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.735
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.735
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.735
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.732
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.731
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.730
nono Oryzias latipes ENSORLG00000012801 I 0.730
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.728
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.728
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.728
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.726
nono Takifugu rubripes ENSTRUG00000005554 I 0.723
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.721
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.721
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.721
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.718
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.717
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.716
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.714
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.709
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.709
sfpq Oryzias latipes ENSORLG00000007459 I 0.709
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.707
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.703
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.701
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.701
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.701
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.700