CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RS2Z33
(
Arabidopsis thaliana
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
AT2G37340-TAIR-G
T07154_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G37340.1-P
RRM
13
75
LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRIT
AT2G37340.1-P
CCHC ZF
99
116
GRCFNCGVDGHWARDCTA
AT2G37340.1-P
CCHC ZF
121
138
NKCYRCGERGHIERNCKN
AT2G37340.2-P
CCHC ZF
69
86
GRCFNCGVDGHWARDCTA
AT2G37340.2-P
CCHC ZF
91
108
NKCYRCGERGHIERNCKN
AT2G37340.3-P
RRM
1
34
MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRIT
AT2G37340.3-P
CCHC ZF
58
75
GRCFNCGVDGHWARDCTA
AT2G37340.3-P
CCHC ZF
80
97
NKCYRCGERGHIERNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DHX57
Callithrix jacchus
ENSCJAG00000015097
N
0.000
DHX57
Dasypus novemcinctus
ENSDNOG00000016122
N
0.000
DHX57
Felis catus
ENSFCAG00000006258
N
0.000
LOC429336
Gallus gallus
ENSGALG00000014483
N
0.000
DHX57
Gorilla gorilla
ENSGGOG00000008187
N
0.000
DHX57
Macaca mulatta
ENSMMUG00000021066
N
0.000
DHX57
Monodelphis domestica
ENSMODG00000008743
N
0.000
Dhx57
Mus musculus
ENSMUSG00000035051
N
0.000
DHX57
Ornithorhynchus anatinus
ENSOANG00000014981
N
0.000
ENSPPYG00000012478
Pongo pygmaeus
ENSPPYG00000012478
N
0.000
DHX57
Pteropus vampyrus
ENSPVAG00000012080
N
0.000
Dhx57
Rattus norvegicus
ENSRNOG00000027329
N
0.000
DHX57
Sus scrofa
ENSSSCG00000008479
N
0.000
DHX57
Tupaia belangeri
ENSTBEG00000005067
N
0.000
DHX57
Taeniopygia guttata
ENSTGUG00000002076
N
0.000
DHX57
Tarsius syrichta
ENSTSYG00000003905
N
0.000
DHX57
Tursiops truncatus
ENSTTRG00000014328
N
0.000
DHX57
Vicugna pacos
ENSVPAG00000003319
N
0.000