LOC_Os01g06290 (Oryza sativa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		LOC_Os01g06290 T07392_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g06290.1 RRM 20 82
LOC_Os01g06290.1 CCHC ZF 109 126
LOC_Os01g06290.1 CCHC ZF 131 148
LOC_Os01g06290.2 RRM 20 82
LOC_Os01g06290.2 CCHC ZF 109 126
LOC_Os01g06290.2 CCHC ZF 131 148
LOC_Os01g06290.3 RRM 1 34
LOC_Os01g06290.3 CCHC ZF 61 78
LOC_Os01g06290.3 CCHC ZF 83 100
LOC_Os01g06290.4 RRM 20 82
LOC_Os01g06290.4 CCHC ZF 109 126
LOC_Os01g06290.4 CCHC ZF 131 148

Links

Other CCHC ZF,RRM family RBPs
Other Oryza sativa RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001527 Ricinus communis 29805.m001527 N 0.798
AC235022_4 Medicago truncatula AC235022_4 N 0.818
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.808
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.828
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 1.000
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.788
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.949
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.788
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.798
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.808
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.808
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.768
chr1.CM0033.10.nd Lotus japonicus chr1.CM0033.10.nd N 0.771
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.828
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.818
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.818
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.828
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.818
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.808
GRMZM2G083975 Zea mays GRMZM2G083975 N 0.714
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.737
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.758
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.758
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.778
GSVIVG00025580001 Vitis vinifera GSVIVG00025580001 N 0.871
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.869
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.828
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.808
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.818
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.788
mgf009930m Mimulus guttatus mgf009930m N 0.788
PK05606.1 Cannabis sativa PK05606.1 N 0.750
PK26144.1 Cannabis sativa PK26144.1 N 0.818
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.800
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.788
ppa009074m Prunus persica ppa009074m N 0.818
ppa009294m Prunus persica ppa009294m N 0.838
ppa009671m Prunus persica ppa009671m N 0.720
SB03G005500 Sorghum bicolor Sb03g005500 N 0.909
SB09G001910 Sorghum bicolor Sb09g001910 N 0.788
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.747