RGD1562120 (Rattus norvegicus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSRNOG00000040034 T17006_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.789
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.789
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.722
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.722
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.722
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000058264 CSD 30 100

Links

Other CSD family RBPs
Other Rattus norvegicus RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH43814 Xenopus laevis AAH43814 I 0.000
AAH68788 Xenopus laevis AAH68788 N 0.000
AAH74212 Xenopus laevis AAH74212 I 0.000
AAH97855 Xenopus laevis AAH97855 I 0.000
AAU25946 Xenopus laevis AAU25946 I 0.000
ABV54637 Xenopus laevis ABV54637 I 0.000
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.000
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.000
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.000
CBF67671 Xenopus laevis CBF67671 N 0.000
CBU92545 Xenopus laevis CBU92545 N 0.000
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.000
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.000
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.000
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.000
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.000
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.000
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.000
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.000
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.000
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.000
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.000
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.000
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.000
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.000
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.000
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.000
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.000
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.000
hnrnpab Danio rerio ENSDARG00000007960 I 0.000
HNRNPAB Danio rerio ENSDARG00000017568 I 0.000
hnrnpd Danio rerio ENSDARG00000059246 I 0.000
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.000
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.000
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.000
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.000
LOC100060733 Equus caballus ENSECAG00000009344 I 0.000
LOC100069254 Equus caballus ENSECAG00000014816 I 0.000
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.000
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.000
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.000
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.000
HNRNPAB Erinaceus europaeus ENSEEUG00000013226 I 0.000
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.000
HNRNPD Homo sapiens ENSG00000138668 I 0.000
HNRPDL Homo sapiens ENSG00000152795 I 0.000
HNRNPAB Homo sapiens ENSG00000197451 D 0.000
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.000
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.000
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.000
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.000
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.000
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.000
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.000
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.000
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.000
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.000
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.000
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.000
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.000
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.000
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.000
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.000
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.000
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.000
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.000
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.000
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.000
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.000
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.000
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.000
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.000
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.000
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.000
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.000
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.000
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.000
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.000
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.000
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.000
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.000
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.000
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.000
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.000
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.000
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.000
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.000
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.000
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.000
HNRNPD Procavia capensis ENSPCAG00000002182 I 0.000
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.000
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.000
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.000
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.000
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.000
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.000
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.000
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.000
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.000
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.000
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.000
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.000
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.000
HNRNPD Sorex araneus ENSSARG00000006883 I 0.000
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.000
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.000
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.000
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.000
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.000
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.000
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.000
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.000
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.000
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.000
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.000
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.000
HNRNPD Takifugu rubripes ENSTRUG00000018450 I 0.000
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.000
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.000
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.000
HNRNPAB Tursiops truncatus ENSTTRG00000010604 I 0.000
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.000
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.000
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.000
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.000
Q6NU14 Xenopus laevis Q6NU14 N 0.000