CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RGD1562120
(
Rattus norvegicus
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSRNOG00000040034
T17006_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.789
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.789
ybx2-a
M260_0.6
Xenopus laevis
GCCANACCAYCGC
SELEX
Cook et al.(2011)
130_11376140
0.722
ybx2-a
M254_0.6
Xenopus laevis
KAACAUCU
SELEX
Cook et al.(2011)
115_7499328
0.722
ybx2-a
M250_0.6
Xenopus laevis
UAACAUC
SELEX
Cook et al.(2011)
114_7499328
0.722
YBX2
M082_0.6
Homo sapiens
AACAWCD
RNAcompete
Ray et al.(2013)
RNCMPT00084
0.708
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000058264
CSD
30
100
KVLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGL
Links
Other
CSD
family RBPs
Other
Rattus norvegicus
RBPs
117 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH43814
Xenopus laevis
AAH43814
I
0.000
AAH68788
Xenopus laevis
AAH68788
N
0.000
AAH74212
Xenopus laevis
AAH74212
I
0.000
AAH97855
Xenopus laevis
AAH97855
I
0.000
AAU25946
Xenopus laevis
AAU25946
I
0.000
ABV54637
Xenopus laevis
ABV54637
I
0.000
Ame_R000242
Ailuropoda melanoleuca
Ame_R000242
I
0.000
Ame_R000243
Ailuropoda melanoleuca
Ame_R000243
I
0.000
Ame_R012484
Ailuropoda melanoleuca
Ame_R012484
I
0.000
CBF67671
Xenopus laevis
CBF67671
N
0.000
CBU92545
Xenopus laevis
CBU92545
N
0.000
HNRNPD
Anolis carolinensis
ENSACAG00000010342
I
0.000
HNRNPAB
Anolis carolinensis
ENSACAG00000016946
I
0.000
Q3ZC44_BOVIN
Bos taurus
ENSBTAG00000013627
I
0.000
A5D9H5_BOVIN
Bos taurus
ENSBTAG00000013952
I
0.000
A4IF81_BOVIN
Bos taurus
ENSBTAG00000014804
I
0.000
HNRNPAB
Canis familiaris
ENSCAFG00000000241
I
0.000
ENSCAFG00000008940
Canis familiaris
ENSCAFG00000008940
I
0.000
HNRNPD
Canis familiaris
ENSCAFG00000025045
I
0.000
HNRNPD
Choloepus hoffmanni
ENSCHOG00000000045
I
0.000
ENSCHOG00000000160
Choloepus hoffmanni
ENSCHOG00000000160
I
0.000
LOC100404672
Callithrix jacchus
ENSCJAG00000005154
I
0.000
LOC100390818
Callithrix jacchus
ENSCJAG00000012235
I
0.000
LOC100400250
Callithrix jacchus
ENSCJAG00000015165
I
0.000
LOC100412686
Callithrix jacchus
ENSCJAG00000015197
I
0.000
LOC100397832
Callithrix jacchus
ENSCJAG00000031195
I
0.000
ENSCJAG00000032456
Callithrix jacchus
ENSCJAG00000032456
I
0.000
ENSCPOG00000015619
Cavia porcellus
ENSCPOG00000015619
I
0.000
HNRNPAB
Cavia porcellus
ENSCPOG00000025972
I
0.000
hnrnpab
Danio rerio
ENSDARG00000007960
I
0.000
HNRNPAB
Danio rerio
ENSDARG00000017568
I
0.000
hnrnpd
Danio rerio
ENSDARG00000059246
I
0.000
ENSDNOG00000003887
Dasypus novemcinctus
ENSDNOG00000003887
I
0.000
HNRNPAB
Dasypus novemcinctus
ENSDNOG00000013820
I
0.000
ENSDORG00000000968
Dipodomys ordii
ENSDORG00000000968
I
0.000
Hnrnpd
Dipodomys ordii
ENSDORG00000012507
I
0.000
LOC100060733
Equus caballus
ENSECAG00000009344
I
0.000
LOC100069254
Equus caballus
ENSECAG00000014816
I
0.000
ENSECAG00000018242
Equus caballus
ENSECAG00000018242
I
0.000
Q6X9Z3_HORSE
Equus caballus
ENSECAG00000022692
I
0.000
HNRPDL
Erinaceus europaeus
ENSEEUG00000004301
I
0.000
HNRNPD
Erinaceus europaeus
ENSEEUG00000007552
I
0.000
HNRNPAB
Erinaceus europaeus
ENSEEUG00000013226
I
0.000
HNRNPD
Echinops telfairi
ENSETEG00000016709
I
0.000
HNRNPD
Homo sapiens
ENSG00000138668
I
0.000
HNRPDL
Homo sapiens
ENSG00000152795
I
0.000
HNRNPAB
Homo sapiens
ENSG00000197451
D
0.000
HNRNPAB
Gasterosteus aculeatus
ENSGACG00000018116
I
0.000
HNRNPAB
Gasterosteus aculeatus
ENSGACG00000020830
I
0.000
Q5ZIH1_CHICK
Gallus gallus
ENSGALG00000011184
I
0.000
Q90626_CHICK
Gallus gallus
ENSGALG00000014381
I
0.000
HNRDL_CHICK
Gallus gallus
ENSGALG00000023199
I
0.000
HNRPDL
Gorilla gorilla
ENSGGOG00000003714
I
0.000
HNRNPAB
Gorilla gorilla
ENSGGOG00000011692
I
0.000
HNRNPD
Gorilla gorilla
ENSGGOG00000026760
I
0.000
ENSGGOG00000028444
Gorilla gorilla
ENSGGOG00000028444
I
0.000
ENSLAFG00000008612
Loxodonta africana
ENSLAFG00000008612
I
0.000
HNRNPD
Loxodonta africana
ENSLAFG00000016483
I
0.000
HNRNPAB
Macropus eugenii
ENSMEUG00000007909
I
0.000
ENSMEUG00000011454
Macropus eugenii
ENSMEUG00000011454
I
0.000
HNRNPAB
Meleagris gallopavo
ENSMGAG00000007727
I
0.000
HNRPDL
Meleagris gallopavo
ENSMGAG00000008033
I
0.000
HNRNPD
Meleagris gallopavo
ENSMGAG00000008051
I
0.000
HNRPDL
Microcebus murinus
ENSMICG00000001445
I
0.000
HNRNPD
Microcebus murinus
ENSMICG00000010984
I
0.000
HNRNPD
Myotis lucifugus
ENSMLUG00000010628
I
0.000
HNRPDL
Myotis lucifugus
ENSMLUG00000014452
I
0.000
HNRNPAB
Macaca mulatta
ENSMMUG00000003996
I
0.000
HNRNPD
Macaca mulatta
ENSMMUG00000014030
I
0.000
HNRPDL
Macaca mulatta
ENSMMUG00000015777
I
0.000
HNRNPAB
Monodelphis domestica
ENSMODG00000004217
I
0.000
ENSMODG00000006825
Monodelphis domestica
ENSMODG00000006825
I
0.000
HNRNPD
Monodelphis domestica
ENSMODG00000011898
I
0.000
ENSMODG00000011916
Monodelphis domestica
ENSMODG00000011916
I
0.000
Hnrnpd
Mus musculus
ENSMUSG00000000568
I
0.000
Hnrnpab
Mus musculus
ENSMUSG00000020358
I
0.000
Hnrpdl
Mus musculus
ENSMUSG00000029328
I
0.000
HNRNPD
Ornithorhynchus anatinus
ENSOANG00000001932
I
0.000
HNRPDL
Ornithorhynchus anatinus
ENSOANG00000004651
I
0.000
HNRNPAB
Ornithorhynchus anatinus
ENSOANG00000004998
I
0.000
HNRNPD
Oryctolagus cuniculus
ENSOCUG00000001357
I
0.000
HNRPDL
Oryctolagus cuniculus
ENSOCUG00000013805
I
0.000
HNRNPAB
Oryctolagus cuniculus
ENSOCUG00000026424
I
0.000
HNRNPAB
Ochotona princeps
ENSOPRG00000002546
I
0.000
HNRPDL
Ochotona princeps
ENSOPRG00000007178
I
0.000
HNRNPD
Ochotona princeps
ENSOPRG00000009336
I
0.000
HNRNPD
Oryzias latipes
ENSORLG00000001833
I
0.000
HNRNPAB
Oryzias latipes
ENSORLG00000005327
I
0.000
HNRNPAB
Oryzias latipes
ENSORLG00000015501
I
0.000
HNRNPD
Procavia capensis
ENSPCAG00000002182
I
0.000
HNRNPAB
Procavia capensis
ENSPCAG00000006760
I
0.000
HNRPDL
Procavia capensis
ENSPCAG00000011543
I
0.000
ENSPPYG00000014885
Pongo pygmaeus
ENSPPYG00000014885
I
0.000
ENSPPYG00000014886
Pongo pygmaeus
ENSPPYG00000014886
I
0.000
ENSPPYG00000016107
Pongo pygmaeus
ENSPPYG00000016107
I
0.000
HNRNPD
Pan troglodytes
ENSPTRG00000016215
I
0.000
HNRPDL
Pan troglodytes
ENSPTRG00000016217
I
0.000
XR_022913.1
Pan troglodytes
ENSPTRG00000017601
I
0.000
HNRNPD
Pteropus vampyrus
ENSPVAG00000000003
I
0.000
HNRNPAB
Pteropus vampyrus
ENSPVAG00000016742
I
0.000
D3ZN89_RAT
Rattus norvegicus
ENSRNOG00000002270
I
0.000
Hnrpd
Rattus norvegicus
ENSRNOG00000002292
I
0.000
Hnrnpab
Rattus norvegicus
ENSRNOG00000003645
I
0.000
HNRNPD
Sorex araneus
ENSSARG00000006883
I
0.000
HNRNPAB
Sus scrofa
ENSSSCG00000001932
I
0.000
HNRNPD
Spermophilus tridecemlineatus
ENSSTOG00000013970
I
0.000
HNRPDL
Spermophilus tridecemlineatus
ENSSTOG00000013979
I
0.000
HNRPDL
Tupaia belangeri
ENSTBEG00000002817
I
0.000
HNRNPAB
Taeniopygia guttata
ENSTGUG00000001168
I
0.000
HNRPDL
Taeniopygia guttata
ENSTGUG00000002850
I
0.000
HNRNPD
Taeniopygia guttata
ENSTGUG00000002858
I
0.000
HNRNPAB
Tetraodon nigroviridis
ENSTNIG00000007596
I
0.000
HNRNPAB
Tetraodon nigroviridis
ENSTNIG00000010512
D
0.000
HNRNPD
Tetraodon nigroviridis
ENSTNIG00000013499
I
0.000
HNRNPAB
Takifugu rubripes
ENSTRUG00000000612
I
0.000
HNRNPAB
Takifugu rubripes
ENSTRUG00000008411
I
0.000
HNRNPD
Takifugu rubripes
ENSTRUG00000018450
I
0.000
HNRNPD
Tarsius syrichta
ENSTSYG00000010395
I
0.000
HNRPDL
Tursiops truncatus
ENSTTRG00000001793
I
0.000
HNRNPD
Tursiops truncatus
ENSTTRG00000007592
I
0.000
HNRNPAB
Tursiops truncatus
ENSTTRG00000010604
I
0.000
HNRNPD
Vicugna pacos
ENSVPAG00000004374
I
0.000
hnrnpab
Xenopus tropicalis
ENSXETG00000003836
I
0.000
hnrnpd
Xenopus tropicalis
ENSXETG00000012569
I
0.000
hnrpdl
Xenopus tropicalis
ENSXETG00000023026
I
0.000
Q6NU14
Xenopus laevis
Q6NU14
N
0.000