CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Canis familiaris
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSCAFG00000019942
T18482_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000029540
KH
5
67
TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLL
ENSCAFP00000029540
KH
90
154
IQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMV
ENSCAFP00000029540
KH
181
243
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVI
ENSCAFP00000029540
KH
282
347
EITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLI
Links
Other
KH
family RBPs
Other
Canis familiaris
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44277
Xenopus laevis
AAH44277
I
0.752
AAH60400
Xenopus laevis
AAH60400
N
0.911
AAH70981
Xenopus laevis
AAH70981
I
0.760
AAI69815
Xenopus laevis
AAI69815
I
0.760
AAN77161
Xenopus laevis
AAN77161
I
0.744
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.996
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.788
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.787
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.791
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.973
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.791
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.791
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.791
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.973
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.791
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.961
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.848
fubp1
Danio rerio
ENSDARG00000029248
I
0.760
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.977
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.791
FUBP1
Equus caballus
ENSECAG00000010867
I
0.791
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.953
FUBP3
Felis catus
ENSFCAG00000005113
N
0.977
FUBP3
Homo sapiens
ENSG00000107164
N
0.969
FUBP1
Homo sapiens
ENSG00000162613
I
0.795
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.754
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.809
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.934
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.788
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.969
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.795
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.791
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.984
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.934
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.791
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.988
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.922
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.791
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.795
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.969
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.957
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.973
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.787
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.946
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.791
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.757
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.848
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.791
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.726
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.977
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.760
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.813
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.833
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.957
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.791
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.795
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.969
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.795
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.969
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.977
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.977
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.791
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.791
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.864
FUBP3
Spermophilus tridecemlineatus
ENSSTOG00000014105
N
0.704
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.787
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.934
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.773
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.829
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.817
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.756
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.821
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.809
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.791
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.791
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.791
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.922
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.767