KHSRP (Monodelphis domestica)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSMODG00000001952 T19089_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.934
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.934
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.934
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.934
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000002379 KH 61 123
ENSMODP00000002379 KH 150 214
ENSMODP00000002379 KH 245 301
ENSMODP00000002379 KH 341 406
ENSMODP00000032565 KH 56 118
ENSMODP00000032565 KH 145 209
ENSMODP00000032565 KH 240 299
ENSMODP00000032565 KH 339 404

Links

Other KH family RBPs
Other Monodelphis domestica RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI61696 Xenopus laevis AAI61696 I 0.860
AAI69923 Xenopus laevis AAI69923 I 0.864
AAN77160 Xenopus laevis AAN77160 I 0.864
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.713
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.934
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.712
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.930
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.716
LOC505564 Bos taurus ENSBTAG00000021018 I 0.934
KHSRP Canis familiaris ENSCAFG00000018667 I 0.934
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.716
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.712
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.716
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.934
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.716
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.934
KHSRP Danio rerio ENSDARG00000026489 I 0.852
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.839
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.930
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.716
FUBP1 Equus caballus ENSECAG00000010867 I 0.716
LOC100065608 Equus caballus ENSECAG00000018305 I 0.934
KHSRP Echinops telfairi ENSETEG00000004793 I 0.825
KHSRP Felis catus ENSFCAG00000003731 I 0.934
KHSRP Homo sapiens ENSG00000088247 D 0.934
FUBP1 Homo sapiens ENSG00000162613 I 0.720
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.813
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.813
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.707
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.934
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.720
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.930
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.716
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.903
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.704
KHSRP Microcebus murinus ENSMICG00000007863 I 0.933
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.716
KHSRP Myotis lucifugus ENSMLUG00000015543 I 0.782
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.720
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.934
Khsrp Mus musculus ENSMUSG00000007670 I 0.930
Fubp1 Mus musculus ENSMUSG00000028034 I 0.716
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.826
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.716
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.716
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.926
KHSRP Oryzias latipes ENSORLG00000011882 I 0.759
KHSRP Procavia capensis ENSPCAG00000000246 I 0.778
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.716
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.720
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.934
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.790
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.720
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.934
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.930
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.716
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.716
KHSRP Sus scrofa ENSSSCG00000013538 I 0.934
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.934
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.708
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.759
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.763
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.708
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.716
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.934
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.716
KHSRP Vicugna pacos ENSVPAG00000010837 I 0.700
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.700
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.774