CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Monodelphis domestica
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMODG00000001952
T19089_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.934
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.934
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.934
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.934
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000002379
KH
61
123
TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML
ENSMODP00000002379
KH
150
214
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMV
ENSMODP00000002379
KH
245
301
PKNSVGGGIGPSGKMIQKIQRGAGVPKQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSMODP00000002379
KH
341
406
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
ENSMODP00000032565
KH
56
118
TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML
ENSMODP00000032565
KH
145
209
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMV
ENSMODP00000032565
KH
240
299
PKNSVGGGIGPSGKMIQKIQRGAGVPKQFKQGPNYDGTGPEKIAHIMGPPDRCEHAARII
ENSMODP00000032565
KH
339
404
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Monodelphis domestica
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI61696
Xenopus laevis
AAI61696
I
0.860
AAI69923
Xenopus laevis
AAI69923
I
0.864
AAN77160
Xenopus laevis
AAN77160
I
0.864
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.713
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.934
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.712
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.930
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.716
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.934
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.934
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.716
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.712
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.716
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.934
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.716
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.934
KHSRP
Danio rerio
ENSDARG00000026489
I
0.852
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.839
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.930
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.716
FUBP1
Equus caballus
ENSECAG00000010867
I
0.716
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.934
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.825
KHSRP
Felis catus
ENSFCAG00000003731
I
0.934
KHSRP
Homo sapiens
ENSG00000088247
D
0.934
FUBP1
Homo sapiens
ENSG00000162613
I
0.720
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.813
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.813
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.707
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.934
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.720
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.930
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.716
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.903
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.704
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.933
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.716
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.782
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.720
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.934
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.930
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.716
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.826
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.716
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.716
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.926
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.759
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.778
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.716
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.720
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.934
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.790
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.720
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.934
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.930
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.716
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.716
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.934
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.934
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.708
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.759
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.763
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.708
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.716
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.934
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.716
KHSRP
Vicugna pacos
ENSVPAG00000010837
I
0.700
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.700
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.774