PSPC1_BOVIN (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000003934 T34781_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.744
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000005134 RRM 81 145
ENSBTAP00000005134 RRM 155 219

Links

Other RRM family RBPs
Other Bos taurus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.744
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.992
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.969
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.727
SFPQ Bos taurus ENSBTAG00000016328 I 0.744
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.744
PSPC1 Canis familiaris ENSCAFG00000007365 N 0.892
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.737
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.992
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.744
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.992
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.992
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.744
pspc1 Danio rerio ENSDARG00000006621 N 0.777
sfpq Danio rerio ENSDARG00000011564 I 0.715
nono Danio rerio ENSDARG00000020482 I 0.715
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.931
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.729
Pspc1 Dipodomys ordii ENSDORG00000016050 I 1.000
LOC100069588 Equus caballus ENSECAG00000000642 I 0.744
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.992
SFPQ Echinops telfairi ENSETEG00000001095 I 0.744
PSPC1 Felis catus ENSFCAG00000013701 I 0.962
SFPQ Homo sapiens ENSG00000116560 D 0.744
PSPC1 Homo sapiens ENSG00000121390 I 0.992
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.744
PSPC1 Gasterosteus aculeatus ENSGACG00000014901 N 0.708
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.750
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.969
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.977
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.744
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.992
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.744
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.992
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.737
SFPQ Microcebus murinus ENSMICG00000011755 I 0.744
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.992
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.992
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.992
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.737
Pspc1 Mus musculus ENSMUSG00000021938 I 0.992
Sfpq Mus musculus ENSMUSG00000028820 I 0.744
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.729
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.738
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.744
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.992
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.744
PSPC1 Oryzias latipes ENSORLG00000004232 N 0.731
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.733
SFPQ Procavia capensis ENSPCAG00000006164 I 0.744
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.744
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.992
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.744
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.992
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.985
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.744
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.992
PSPC1 Sorex araneus ENSSARG00000000888 I 0.992
PSPC1 Sus scrofa ENSSSCG00000009569 I 1.000
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.744
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.727
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.750
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.969
PSPC1 Tetraodon nigroviridis ENSTNIG00000010358 N 0.708
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.779
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.771
PSPC1 Takifugu rubripes ENSTRUG00000011335 N 0.708
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.712
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 1.000
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.744
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.744
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.763