srsf6b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000016783 T36083_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000022089 RRM 4 66
ENSDARP00000022089 RRM 116 181

Links

Other RRM family RBPs
Other Danio rerio RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CG11337 Drosophila melanogaster FBgn0039846 N 0.000
GF17196 Drosophila ananassae FBgn0094214 N 0.000
GG11868 Drosophila erecta FBgn0104163 N 0.000
GH21615 Drosophila grimshawi FBgn0129076 N 0.000
GI10566 Drosophila mojavensis FBgn0133330 N 0.000
GL27239 Drosophila persimilis FBgn0164820 N 0.000
GM12088 Drosophila sechellia FBgn0167029 N 0.000
GD16436 Drosophila simulans FBgn0188051 N 0.000
GJ22920 Drosophila virilis FBgn0210023 N 0.000
GK22421 Drosophila willistoni FBgn0224400 N 0.000
GE23317 Drosophila yakuba FBgn0240512 N 0.000