CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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srsf6b
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000016783
T36083_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.744
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.744
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000022089
RRM
4
66
VYIGKLSYHVREKDIQRFFGGYGKLMEIDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVI
ENSDARP00000022089
RRM
116
181
LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSHSDMRRALDKLDGTDINGRKIR
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
122 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG11337
Drosophila melanogaster
FBgn0039846
N
0.000
GF17196
Drosophila ananassae
FBgn0094214
N
0.000
GG11868
Drosophila erecta
FBgn0104163
N
0.000
GH21615
Drosophila grimshawi
FBgn0129076
N
0.000
GI10566
Drosophila mojavensis
FBgn0133330
N
0.000
GL27239
Drosophila persimilis
FBgn0164820
N
0.000
GM12088
Drosophila sechellia
FBgn0167029
N
0.000
GD16436
Drosophila simulans
FBgn0188051
N
0.000
GJ22920
Drosophila virilis
FBgn0210023
N
0.000
GK22421
Drosophila willistoni
FBgn0224400
N
0.000
GE23317
Drosophila yakuba
FBgn0240512
N
0.000