srsf6b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000016783 T36083_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000022089 RRM 4 66
ENSDARP00000022089 RRM 116 181

Links

Other RRM family RBPs
Other Danio rerio RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44265 Xenopus laevis AAH44265 I 0.868
AAH46668 Xenopus laevis AAH46668 I 0.891
AAH71160 Xenopus laevis AAH71160 I 0.713
AGAP004592 Anopheles gambiae AGAP004592 I 0.729
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.705
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.705
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.721
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.829
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.729
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.744
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.744
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.907
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.713
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.922
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.705
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.829
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.705
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.705
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.829
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.760
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.705
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.915
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.760
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.705
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.829
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.868
srsf6a Danio rerio ENSDARG00000013729 I 0.938
srsf5b Danio rerio ENSDARG00000027734 I 0.705
srsf5a Danio rerio ENSDARG00000029818 I 0.705
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.829
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.915
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.915
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.837
LOC100053264 Equus caballus ENSECAG00000026873 I 0.705
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.829
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.899
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.705
SRSF5 Felis catus ENSFCAG00000008848 I 0.705
SRSF5 Homo sapiens ENSG00000100650 D 0.705
SRSF4 Homo sapiens ENSG00000116350 I 0.829
SRSF6 Homo sapiens ENSG00000124193 I 0.915
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.829
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.953
SRSF6 Gallus gallus ENSGALG00000000990 N 0.713
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.705
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.915
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.705
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.829
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.705
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.915
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.829
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.907
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.705
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.791
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.705
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.829
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.705
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.915
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.829
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.713
Srsf6 Mus musculus ENSMUSG00000016921 I 0.915
Srsf5 Mus musculus ENSMUSG00000021134 I 0.705
Srsf4 Mus musculus ENSMUSG00000028911 I 0.829
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.829
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.705
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.705
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.705
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.822
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.930
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.829
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.829
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.899
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.829
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.705
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.915
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.829
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.705
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.922
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.705
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.915
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.829
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.705
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.829
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.721
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.922
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.822
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.946
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.822
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.961
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.822
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.705
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.822
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.829
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.705
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.705
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.705
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.806
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.705
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.899
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.736
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.767
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.752
B52 Drosophila melanogaster FBgn0004587 D 0.744
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.736
GF17608 Drosophila ananassae FBgn0094626 I 0.744
GH18528 Drosophila grimshawi FBgn0125995 I 0.736
GI22065 Drosophila mojavensis FBgn0144794 I 0.736
GL23543 Drosophila persimilis FBgn0161133 I 0.736
GJ24113 Drosophila virilis FBgn0211197 I 0.736
GK13948 Drosophila willistoni FBgn0215954 I 0.744
ISCW010321 Ixodes scapularis ISCW010321 I 0.721
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
ISCW014220 Ixodes scapularis ISCW014220 I 0.713
PHUM290500 Pediculus humanus PHUM290500 I 0.744
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.721
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.721