ENSGACG00000002034 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000002034 T37393_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.835
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.835
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.707
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000002643 RRM 260 324
ENSGACP00000002643 RRM 334 401
ENSGACP00000002654 RRM 251 315
ENSGACP00000002654 RRM 325 392
ENSGACP00000002658 RRM 219 283
ENSGACP00000002658 RRM 293 360

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.835
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.752
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.767
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.820
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.744
SFPQ Bos taurus ENSBTAG00000016328 I 0.835
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.835
PSPC1 Canis familiaris ENSCAFG00000007365 N 0.000
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.812
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.752
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.835
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.752
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.752
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.835
pspc1 Danio rerio ENSDARG00000006621 N 0.707
sfpq Danio rerio ENSDARG00000011564 I 0.835
nono Danio rerio ENSDARG00000020482 I 0.000
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.707
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.805
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.744
LOC100069588 Equus caballus ENSECAG00000000642 I 0.835
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.737
SFPQ Echinops telfairi ENSETEG00000001095 I 0.835
PSPC1 Felis catus ENSFCAG00000013701 I 0.722
SFPQ Homo sapiens ENSG00000116560 D 0.835
PSPC1 Homo sapiens ENSG00000121390 I 0.752
PSPC1 Gasterosteus aculeatus ENSGACG00000014901 N 0.000
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.842
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.767
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.767
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.835
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.752
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.835
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.752
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.842
SFPQ Microcebus murinus ENSMICG00000011755 I 0.835
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.752
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.752
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.752
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.842
Pspc1 Mus musculus ENSMUSG00000021938 I 0.752
Sfpq Mus musculus ENSMUSG00000028820 I 0.835
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.850
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.000
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.835
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.835
PSPC1 Oryzias latipes ENSORLG00000004232 N 0.000
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.895
SFPQ Procavia capensis ENSPCAG00000006164 I 0.835
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.835
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.752
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.835
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.752
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.744
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.835
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.752
PSPC1 Sorex araneus ENSSARG00000000888 I 0.752
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.744
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.835
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.789
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.842
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.767
PSPC1 Tetraodon nigroviridis ENSTNIG00000010358 N 0.000
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.925
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.925
PSPC1 Takifugu rubripes ENSTRUG00000011335 N 0.000
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.782
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.744
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.835
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.835
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.805