SYNCRIP (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000010099 T39528_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.980
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.880
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.841
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000016010 RRM 164 232
ENSOANP00000016010 RRM 245 312
ENSOANP00000016010 RRM 340 402
ENSOANP00000016011 RRM 74 142
ENSOANP00000016011 RRM 155 222
ENSOANP00000016011 RRM 250 312

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70529 Xenopus laevis AAH70529 I 0.970
AAI61702 Xenopus laevis AAI61702 I 0.871
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.837
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.990
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.975
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.842
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.990
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.837
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.990
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.829
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.824
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.837
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.742
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.990
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.837
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.990
syncripl Danio rerio ENSDARG00000026723 I 0.896
syncrip Danio rerio ENSDARG00000040184 I 0.920
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.785
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.820
LOC100070472 Equus caballus ENSECAG00000012464 I 0.840
HNRNPR Equus caballus ENSECAG00000013733 I 0.837
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.765
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.799
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.985
HNRNPR Homo sapiens ENSG00000125944 I 0.837
SYNCRIP Homo sapiens ENSG00000135316 I 0.990
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.820
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.911
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.920
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.832
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.995
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.990
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.837
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.837
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.990
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.721
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.832
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.995
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.990
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.980
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.789
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.837
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.990
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.990
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.832
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.990
Syncrip Mus musculus ENSMUSG00000032423 I 0.985
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.837
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.837
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.990
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.829
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.820
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.810
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.720
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.746
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.803
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.910
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.891
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.726
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.837
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.990
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.824
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.990
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.990
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.824
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.985
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.837
HNRNPR Sorex araneus ENSSARG00000001732 I 0.824
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.990
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.990
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.824
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.832
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.901
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.896
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.805
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.896
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.801
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.901
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.990
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.766
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.990
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.871
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.980