PABPN1L (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000005534 T40133_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006962 RRM 66 135

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2JWN_A Xenopus laevis 2JWN_A I 0.000
2JWN_B Xenopus laevis 2JWN_B I 0.000
AAG36902 Xenopus laevis AAG36902 I 0.000
AAH45063 Xenopus laevis AAH45063 I 0.700
AAH73657 Xenopus laevis AAH73657 I 0.000
AAI70309 Xenopus laevis AAI70309 I 0.000
AAI70311 Xenopus laevis AAI70311 I 0.000
AAO33927 Xenopus laevis AAO33927 N 0.000
AAR26262 Xenopus laevis AAR26262 I 0.000
AAR26263 Xenopus laevis AAR26263 I 0.000
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.700
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.714
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.000
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.000
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.000
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.000
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.714
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.714
PABPN1L Bos taurus ENSBTAG00000023752 N 0.000
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.714
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.714
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.714
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.000
pabpn1 Danio rerio ENSDARG00000045373 I 0.000
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.714
LOC100051357 Equus caballus ENSECAG00000000378 I 0.704
LOC100055599 Equus caballus ENSECAG00000011652 I 0.714
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.000
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.000
PABPN1 Homo sapiens ENSG00000100836 D 0.714
PABPN1L Homo sapiens ENSG00000205022 I 0.000
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.000
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.900
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.714
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.000
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.714
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.000
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.000
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.714
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.000
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.714
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.000
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.000
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.700
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.714
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.000
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.714
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.700
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.714
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.000
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.714
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.000
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.714
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.000
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.714
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.000
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.700
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.714
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.000
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.714
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.714
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.000
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.000
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.914
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.000
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.914
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.700
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.000
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.000
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.000
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.714
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.000
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.000
PHUM037550 Pediculus humanus PHUM037550 I 0.000
Q6TY21 Xenopus laevis Q6TY21 I 0.000
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.700
Q804A5 Xenopus laevis Q804A5 N 0.000
Q9DDY9 Xenopus laevis Q9DDY9 I 0.000