SRSF6 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000003244 T42216_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000007604 RRM 4 66
ENSTRUP00000007604 RRM 115 180
ENSTRUP00000007605 RRM 4 66
ENSTRUP00000007605 RRM 114 179
ENSTRUP00000007606 RRM 4 66
ENSTRUP00000007606 RRM 114 179

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R000345 Ailuropoda melanoleuca Ame_R000345 I 0.000
ANKRD17 Anolis carolinensis ENSACAG00000011145 I 0.000
ENSACAG00000013168 Anolis carolinensis ENSACAG00000013168 I 0.000
ANKRD17 Bos taurus ENSBTAG00000004912 I 0.000
ENSBTAG00000010871 Bos taurus ENSBTAG00000010871 I 0.000
ANKRD17 Canis familiaris ENSCAFG00000002998 I 0.000
ENSCAFG00000005786 Canis familiaris ENSCAFG00000005786 I 0.000
ENSCHOG00000005963 Choloepus hoffmanni ENSCHOG00000005963 I 0.000
ANKRD17 Choloepus hoffmanni ENSCHOG00000013527 I 0.000
ANKRD17 Callithrix jacchus ENSCJAG00000014029 I 0.000
ANKHD1 Callithrix jacchus ENSCJAG00000016624 I 0.000
ANKRD17 Cavia porcellus ENSCPOG00000013416 I 0.000
ENSCPOG00000019435 Cavia porcellus ENSCPOG00000019435 I 0.000
ankhd1 Danio rerio ENSDARG00000077860 I 0.000
ENSDNOG00000014116 Dasypus novemcinctus ENSDNOG00000014116 I 0.000
Ankrd17 Dipodomys ordii ENSDORG00000011159 I 0.000
LOC100072419 Equus caballus ENSECAG00000015036 I 0.000
ENSETEG00000012639 Echinops telfairi ENSETEG00000012639 I 0.000
ENSFCAG00000001275 Felis catus ENSFCAG00000001275 I 0.000
ANKHD1 Homo sapiens ENSG00000131503 D 0.000
ANKRD17 Homo sapiens ENSG00000132466 I 0.000
ENSG00000249536 Homo sapiens ENSG00000249536 I 0.000
ANKHD1 Gasterosteus aculeatus ENSGACG00000018351 I 0.000
ANKHD1-EIF4EBP3 Gallus gallus ENSGALG00000001099 I 0.000
ENSGGOG00000000288 Gorilla gorilla ENSGGOG00000000288 I 0.000
ANKRD17 Gorilla gorilla ENSGGOG00000006916 I 0.000
ENSLAFG00000005337 Loxodonta africana ENSLAFG00000005337 I 0.000
ANKRD17 Loxodonta africana ENSLAFG00000021478 I 0.000
ENSMEUG00000013599 Macropus eugenii ENSMEUG00000013599 I 0.000
ANKRD17 Macropus eugenii ENSMEUG00000015289 I 0.000
SLC4A9 Meleagris gallopavo ENSMGAG00000001068 I 0.000
ANKRD17 Meleagris gallopavo ENSMGAG00000010121 I 0.000
ENSMICG00000000358 Microcebus murinus ENSMICG00000000358 I 0.000
ENSMLUG00000003126 Myotis lucifugus ENSMLUG00000003126 I 0.000
ENSMMUG00000019583 Macaca mulatta ENSMMUG00000019583 I 0.000
XR_012966.1 Macaca mulatta ENSMMUG00000030283 I 0.000
ENSMODG00000011596 Monodelphis domestica ENSMODG00000011596 I 0.000
ANKRD17 Monodelphis domestica ENSMODG00000019154 I 0.000
Ankhd1 Mus musculus ENSMUSG00000024483 I 0.000
Ankrd17 Mus musculus ENSMUSG00000055204 I 0.000
ENSMUSG00000089986 Mus musculus ENSMUSG00000089986 I 0.000
ENSOCUG00000011629 Oryctolagus cuniculus ENSOCUG00000011629 I 0.000
ENSOCUG00000015943 Oryctolagus cuniculus ENSOCUG00000015943 I 0.000
ENSOGAG00000014263 Otolemur garnettii ENSOGAG00000014263 I 0.000
ENSOPRG00000006675 Ochotona princeps ENSOPRG00000006675 I 0.000
ANKRD17 Ochotona princeps ENSOPRG00000014184 I 0.000
ANKHD1 Oryzias latipes ENSORLG00000006908 I 0.000
ENSPCAG00000016105 Procavia capensis ENSPCAG00000016105 I 0.000
ENSPPYG00000014821 Pongo pygmaeus ENSPPYG00000014821 I 0.000
ENSPPYG00000015854 Pongo pygmaeus ENSPPYG00000015854 I 0.000
ANKRD17 Pan troglodytes ENSPTRG00000016149 I 0.000
XR_019937.1 Pan troglodytes ENSPTRG00000017313 I 0.000
ANKRD17 Pteropus vampyrus ENSPVAG00000001827 I 0.000
ENSPVAG00000009697 Pteropus vampyrus ENSPVAG00000009697 I 0.000
Ankrd17 Rattus norvegicus ENSRNOG00000002940 I 0.000
Ankhd1-Eif4ebp3 Rattus norvegicus ENSRNOG00000030247 I 0.000
ENSSARG00000007287 Sorex araneus ENSSARG00000007287 I 0.000
ENSSSCG00000014364 Sus scrofa ENSSSCG00000014364 I 0.000
ENSSTOG00000001936 Spermophilus tridecemlineatus ENSSTOG00000001936 I 0.000
ANKRD17 Spermophilus tridecemlineatus ENSSTOG00000009037 I 0.000
ANKRD17 Taeniopygia guttata ENSTGUG00000001580 I 0.000
ANKHD1 Taeniopygia guttata ENSTGUG00000001656 I 0.000
ANKHD1 Tetraodon nigroviridis ENSTNIG00000008996 I 0.000
ANKHD1 Takifugu rubripes ENSTRUG00000001146 I 0.000
ENSTSYG00000003323 Tarsius syrichta ENSTSYG00000003323 I 0.000
ANKRD17 Tarsius syrichta ENSTSYG00000004652 I 0.000
ENSTTRG00000005573 Tursiops truncatus ENSTTRG00000005573 I 0.000
ANKRD17 Tursiops truncatus ENSTTRG00000016542 I 0.000
ANKRD17 Vicugna pacos ENSVPAG00000001331 I 0.000
ENSVPAG00000002452 Vicugna pacos ENSVPAG00000002452 I 0.000
ankrd17 Xenopus tropicalis ENSXETG00000008132 I 0.000
ankhd1 Xenopus tropicalis ENSXETG00000018337 I 0.000