SRSF6 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000003244 T42216_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000007604 RRM 4 66
ENSTRUP00000007604 RRM 115 180
ENSTRUP00000007605 RRM 4 66
ENSTRUP00000007605 RRM 114 179
ENSTRUP00000007606 RRM 4 66
ENSTRUP00000007606 RRM 114 179

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44085 Xenopus laevis AAH44085 I 0.705
AAH44265 Xenopus laevis AAH44265 I 0.884
AAH46668 Xenopus laevis AAH46668 I 0.907
AAH71160 Xenopus laevis AAH71160 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.744
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.713
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.713
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.736
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.837
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.713
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.744
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.744
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.922
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.721
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.721
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.938
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.713
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.837
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.705
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.713
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.837
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.767
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.713
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.930
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.767
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.713
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.837
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.884
srsf6a Danio rerio ENSDARG00000013729 I 0.930
srsf6b Danio rerio ENSDARG00000016783 I 0.961
srsf5b Danio rerio ENSDARG00000027734 I 0.713
srsf5a Danio rerio ENSDARG00000029818 I 0.713
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.837
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.930
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.930
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.845
LOC100053264 Equus caballus ENSECAG00000026873 I 0.713
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.837
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.915
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.713
SRSF5 Felis catus ENSFCAG00000008848 I 0.713
SRSF5 Homo sapiens ENSG00000100650 D 0.713
SRSF4 Homo sapiens ENSG00000116350 I 0.837
SRSF6 Homo sapiens ENSG00000124193 I 0.930
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.837
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.946
SRSF6 Gallus gallus ENSGALG00000000990 N 0.729
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.721
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.930
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.713
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.837
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.930
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.837
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.922
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.713
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.798
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.721
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.837
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.930
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.837
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.930
Srsf5 Mus musculus ENSMUSG00000021134 I 0.713
Srsf4 Mus musculus ENSMUSG00000028911 I 0.837
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.837
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.713
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.713
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.713
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.713
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.829
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.953
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.837
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.837
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.915
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.837
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.713
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.930
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.837
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.713
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.938
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.713
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.930
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.837
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.713
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.837
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.736
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.938
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.721
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.829
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.984
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.829
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.705
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.829
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.705
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.713
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.829
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.837
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.713
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.713
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.713
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.806
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.713
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.899
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.729
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.760
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.783
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.760
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.744
B52 Drosophila melanogaster FBgn0004587 D 0.744
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.736
GF17608 Drosophila ananassae FBgn0094626 I 0.744
GH18528 Drosophila grimshawi FBgn0125995 I 0.736
GI22065 Drosophila mojavensis FBgn0144794 I 0.736
GL23543 Drosophila persimilis FBgn0161133 I 0.736
GJ24113 Drosophila virilis FBgn0211197 I 0.736
GK13948 Drosophila willistoni FBgn0215954 I 0.744
ISCW010321 Ixodes scapularis ISCW010321 I 0.736
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.744
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.744
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.744