RBM23 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011352 T42318_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000028643 RRM 177 245
ENSTRUP00000028643 RRM 274 344
ENSTRUP00000028644 RRM 142 210
ENSTRUP00000028644 RRM 239 309
ENSTRUP00000028645 RRM 169 237
ENSTRUP00000028645 RRM 266 336
ENSTRUP00000028645 RRM 452 507
ENSTRUP00000028646 RRM 158 226
ENSTRUP00000028646 RRM 255 325
ENSTRUP00000028646 RRM 441 496
ENSTRUP00000028647 RRM 27 95
ENSTRUP00000028647 RRM 124 152
ENSTRUP00000028647 RRM 147 172
ENSTRUP00000028647 RRM 301 356

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
114532 Helobdella robusta 114532 N 0.706
AAEL005046 Aedes aegypti AAEL005046 N 0.756
AAH73374 Xenopus laevis AAH73374 N 0.871
AAH75146 Xenopus laevis AAH75146 N 0.859
AAH77813 Xenopus laevis AAH77813 N 0.864
AGAP008433 Anopheles gambiae AGAP008433 N 0.747
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.763
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.889
Ame_R014613 Ailuropoda melanoleuca Ame_R014613 N 0.879
BGIBMGA006208 Bombyx mori BGIBMGA006208 N 0.779
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.768
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.768
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.768
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.768
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.740
RBM23 Anolis carolinensis ENSACAG00000001569 N 0.857
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.898
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.889
Q0IIK8_BOVIN Bos taurus ENSBTAG00000038333 N 0.871
RBM39 Canis familiaris ENSCAFG00000008327 N 0.889
RBM23 Canis familiaris ENSCAFG00000011217 N 0.879
RBM23 Choloepus hoffmanni ENSCHOG00000004460 N 0.721
RBM23 Callithrix jacchus ENSCJAG00000008482 N 0.864
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.900
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.824
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.788
rbm39a Danio rerio ENSDARG00000011613 N 0.903
rbm39b Danio rerio ENSDARG00000041853 N 0.918
RBM23 Dasypus novemcinctus ENSDNOG00000002569 N 0.707
ENSDORG00000004926 Dipodomys ordii ENSDORG00000004926 N 0.886
LOC100052786 Equus caballus ENSECAG00000009910 N 0.879
RBM39 Equus caballus ENSECAG00000013423 N 0.889
RBM39 Erinaceus europaeus ENSEEUG00000004390 N 0.900
RBM23 Erinaceus europaeus ENSEEUG00000015560 N 0.879
RBM39 Echinops telfairi ENSETEG00000016295 N 0.788
RBM23 Felis catus ENSFCAG00000006632 N 0.743
RBM23 Homo sapiens ENSG00000100461 N 0.879
RBM39 Homo sapiens ENSG00000131051 N 0.900
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.937
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.898
RBM39 Gallus gallus ENSGALG00000001550 N 0.893
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.864
RBM23 Gorilla gorilla ENSGGOG00000015707 N 0.879
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.889
RBM23 Loxodonta africana ENSLAFG00000018567 N 0.857
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.888
RBM39 Microcebus murinus ENSMICG00000001668 N 0.889
RBM23 Microcebus murinus ENSMICG00000006364 N 0.871
RBM23 Myotis lucifugus ENSMLUG00000012923 N 0.850
LOC710066 Macaca mulatta ENSMMUG00000018381 N 0.879
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.880
RBM23 Monodelphis domestica ENSMODG00000024448 N 0.857
Rbm39 Mus musculus ENSMUSG00000027620 N 0.900
RBM23 Oryctolagus cuniculus ENSOCUG00000002006 N 0.844
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.889
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.813
RBM23 Ochotona princeps ENSOPRG00000001092 N 0.823
RBM39 Ochotona princeps ENSOPRG00000002183 N 0.900
RBM23 Oryzias latipes ENSORLG00000009919 N 0.918
RBM23 Oryzias latipes ENSORLG00000010370 N 0.993
RBM39 Procavia capensis ENSPCAG00000008764 N 0.788
ENSPPYG00000005649 Pongo pygmaeus ENSPPYG00000005649 N 0.879
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.889
RBM23 Pan troglodytes ENSPTRG00000006151 N 0.871
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.889
RBM23 Pteropus vampyrus ENSPVAG00000013785 N 0.871
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.889
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.889
RBM23 Sorex araneus ENSSARG00000005165 N 0.879
RBM39 Sorex araneus ENSSARG00000007673 N 0.889
RBM39 Sus scrofa ENSSSCG00000007309 N 0.889
RBM23 Spermophilus tridecemlineatus ENSSTOG00000010354 N 0.764
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.782
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.893
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.842
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.995
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.889
RBM23 Tarsius syrichta ENSTSYG00000014755 N 0.736
RBM23 Tursiops truncatus ENSTTRG00000001500 N 0.879
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.889
RBM23 Vicugna pacos ENSVPAG00000000599 N 0.721
RBM39 Vicugna pacos ENSVPAG00000003819 N 0.893
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.874
rbm23 Xenopus tropicalis ENSXETG00000022623 N 0.871
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.763
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.777
e_gw.57.85.1 Branchiostoma floridae e_gw.57.85.1 N 0.716
CG11266 Drosophila melanogaster FBgn0031883 N 0.732
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.737
GF14957 Drosophila ananassae FBgn0091982 N 0.732
GG10454 Drosophila erecta FBgn0102763 N 0.732
GH13506 Drosophila grimshawi FBgn0120982 N 0.725
GI10246 Drosophila mojavensis FBgn0133011 N 0.729
GM16278 Drosophila sechellia FBgn0171194 N 0.732
GD23448 Drosophila simulans FBgn0194830 N 0.732
GJ18017 Drosophila virilis FBgn0205182 N 0.716
GK15272 Drosophila willistoni FBgn0217277 N 0.734
GE14328 Drosophila yakuba FBgn0231943 N 0.732
fgenesh1_pg.scaffold_245000036 Nematostella vectensis fgenesh1_pg.scaffold_245000036 N 0.702
PHUM394230 Pediculus humanus PHUM394230 N 0.758