ISCW014220 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW014220 T44862_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW014220-PA RRM 6 67
ISCW014220-PA RRM 120 185

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A4F5G6 Xenopus laevis A4F5G6 I 0.000
AAEL017168 Aedes aegypti AAEL017168 I 0.000
AAI55921 Xenopus laevis AAI55921 I 0.000
AAI69563 Xenopus laevis AAI69563 I 0.000
AGAP006089 Anopheles gambiae AGAP006089 I 0.000
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.000
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.000
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.000
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.000
Bm1_08900 Brugia malayi Bm1_08900 I 0.000
CAL91350 Xenopus laevis CAL91350 I 0.000
CAL91351 Xenopus laevis CAL91351 I 0.000
CBG02108 Caenorhabditis briggsae CBG02108 I 0.000
CBN11651 Caenorhabditis brenneri CBN11651 I 0.000
CJA09998 Caenorhabditis japonica CJA09998 I 0.000
CRE07377 Caenorhabditis remanei CRE07377 I 0.000
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.000
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.000
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.000
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.000
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.000
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.000
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.000
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.000
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.000
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.000
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.000
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.000
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.000
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.000
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.000
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.000
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.000
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.000
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.000
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.000
FP236187.1 Danio rerio ENSDARG00000010083 I 0.000
a2bp1 Danio rerio ENSDARG00000014746 D 0.000
rbfox1l Danio rerio ENSDARG00000021184 I 0.000
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.000
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.000
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.000
LOC100066233 Equus caballus ENSECAG00000012667 I 0.000
LOC100069362 Equus caballus ENSECAG00000018923 I 0.000
RBFOX3 Equus caballus ENSECAG00000023811 I 0.000
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.000
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.000
RBFOX1 Felis catus ENSFCAG00000008241 I 0.000
A2BP1 Homo sapiens ENSG00000078328 D 0.000
RBFOX2 Homo sapiens ENSG00000100320 I 0.000
RBFOX3 Homo sapiens ENSG00000167281 I 0.000
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.000
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.000
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.000
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.000
A2BP1 Gallus gallus ENSGALG00000007366 I 0.000
RBM9 Gallus gallus ENSGALG00000012540 I 0.000
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.000
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.000
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.000
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.000
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.000
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.000
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.000
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.000
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.000
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.000
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.000
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.000
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.000
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.000
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.000
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.000
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.000
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.000
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.000
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.000
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.000
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.000
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.000
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.000
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.000
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.000
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.000
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.000
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.000
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.000
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.000
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.000
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.000
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.000
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.000
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.000
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.000
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.000
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.000
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.000
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.000
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.000
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.000
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.000
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.000
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.000
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.000
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.000
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.000
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.000
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.000
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.000
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.000
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.000
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.000
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.000
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.000
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.000
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.000
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.000
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.000
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.000
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.000
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.000
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.000
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.000
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.000
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.000
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.000
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.000
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.000
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.000
a2bp1 Drosophila melanogaster FBgn0052062 D 0.000
GF10597 Drosophila ananassae FBgn0087638 I 0.000
GH14949 Drosophila grimshawi FBgn0122424 I 0.000
GI11474 Drosophila mojavensis FBgn0134235 I 0.000
GM25214 Drosophila sechellia FBgn0180074 I 0.000
GD14245 Drosophila simulans FBgn0185930 I 0.000
GJ13667 Drosophila virilis FBgn0200888 I 0.000
GK12272 Drosophila willistoni FBgn0214282 I 0.000
GE21749 Drosophila yakuba FBgn0238995 I 0.000
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.000
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.000
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.000
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.000
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.000
ISCW013123 Ixodes scapularis ISCW013123 I 0.000
LOAG_04679 Loa loa LOAG_04679 I 0.000
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.000
PHUM098700 Pediculus humanus PHUM098700 I 0.000
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.000
Smp_138880 Schistosoma mansoni Smp_138880 I 0.000
Smp_139980 Schistosoma mansoni Smp_139980 I 0.000
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.000
fox-1 Caenorhabditis elegans T07D1.4 D 0.000
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.000