B9HSS5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0010s07790 T45595_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s07790.1 RRM 8 76
POPTR_0010s07790.1 RRM 112 181

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30008.m000830 Ricinus communis 30008.m000830 N 0.842
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.777
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.716
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.712
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.777
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.777
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.777
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.777
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.863
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.813
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.791
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.716
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.770
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.755
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.777
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.777
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.835
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.806
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.741
MDP0000130865 Malus x domestica MDP0000130865 N 0.755
MDP0000173934 Malus x domestica MDP0000173934 N 0.813
MDP0000217366 Malus x domestica MDP0000217366 N 0.806
MDP0000286430 Malus x domestica MDP0000286430 N 0.741
MDP0000320861 Malus x domestica MDP0000320861 N 0.777
PK00513.1 Cannabis sativa PK00513.1 N 0.770
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.748
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.899
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.763
ppa005309m Prunus persica ppa005309m N 0.827
ppa005979m Prunus persica ppa005979m N 0.784
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.770
SB02G005620 Sorghum bicolor Sb02g005620 N 0.705
SB02G005670 Sorghum bicolor Sb02g005670 N 0.705