CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HSS5_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0010s07790
T45595_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s07790.1
RRM
8
76
LFIGGISWETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFADPAVLDMVLQDKHTIDGRMVE
POPTR_0010s07790.1
RRM
112
181
IFVGGLPPTLTEDGFRQYFEAFGFVADVVIMYDQSTQRPRGFGFISFDTEDAVDRVLQRSFHDLNGKQVE
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30008.m000830
Ricinus communis
30008.m000830
N
0.842
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.777
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.716
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.712
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.777
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.777
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.777
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.777
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.863
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.813
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.791
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.716
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.770
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.755
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.777
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.777
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.835
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.806
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.741
MDP0000130865
Malus x domestica
MDP0000130865
N
0.755
MDP0000173934
Malus x domestica
MDP0000173934
N
0.813
MDP0000217366
Malus x domestica
MDP0000217366
N
0.806
MDP0000286430
Malus x domestica
MDP0000286430
N
0.741
MDP0000320861
Malus x domestica
MDP0000320861
N
0.777
PK00513.1
Cannabis sativa
PK00513.1
N
0.770
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.748
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.899
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.763
ppa005309m
Prunus persica
ppa005309m
N
0.827
ppa005979m
Prunus persica
ppa005979m
N
0.784
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.770
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.705
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.705