SB02G005620 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb02g005620 T45917_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb02g005620.1 RRM 15 83
Sb02g005620.1 RRM 115 184

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB02G005670 Sorghum bicolor Sb02g005670 N 1.000
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.971
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.964
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.950
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.928
SB02G037690 Sorghum bicolor Sb02g037690 N 0.928
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.921
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.921
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.914
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.914
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.864
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.850
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.835
30048.m000319 Ricinus communis 30048.m000319 N 0.835
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.827
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.827
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.827
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
29608.m000212 Ricinus communis 29608.m000212 N 0.827
27613.m000635 Ricinus communis 27613.m000635 N 0.827
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.820
PK25912.1 Cannabis sativa PK25912.1 N 0.820
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.820
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.813
ppa004834m Prunus persica ppa004834m N 0.813
PK13457.1 Cannabis sativa PK13457.1 N 0.813
ppa005132m Prunus persica ppa005132m N 0.813
ppa005122m Prunus persica ppa005122m N 0.813
ppa005119m Prunus persica ppa005119m N 0.813
MDP0000204698 Malus x domestica MDP0000204698 N 0.813
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.813
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.813
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.813
MDP0000188788 Malus x domestica MDP0000188788 N 0.806
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.806
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.806
MDP0000609551 Malus x domestica MDP0000609551 N 0.806
MDP0000320618 Malus x domestica MDP0000320618 N 0.806
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.800
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.799
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.799
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.799
mgf012147m Mimulus guttatus mgf012147m N 0.799
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.799
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.799
MDP0000907782 Malus x domestica MDP0000907782 N 0.799
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.799
MDP0000642684 Malus x domestica MDP0000642684 N 0.799
mgf009385m Mimulus guttatus mgf009385m N 0.799
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.799
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.791
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.791
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.791
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.791
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.791
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.791
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.784
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.784
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.784
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.784
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.780
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.777
mgf004139m Mimulus guttatus mgf004139m N 0.777
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.777
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.777
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.770
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.763
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.763
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.755
mgf009486m Mimulus guttatus mgf009486m N 0.743
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.719
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.719
SB05G025410 Sorghum bicolor Sb05g025410 N 0.719
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.705
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.705