MDP0000173934 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000173934 T57384_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000173934 RRM 122 190
MDP0000173934 RRM 284 353

Links

Other RRM family RBPs
Other Malus x domestica RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30008.m000830 Ricinus communis 30008.m000830 N 0.813
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.755
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.723
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.705
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.741
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.741
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.741
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.741
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.842
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.734
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.871
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.730
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.820
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.835
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.763
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.755
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.856
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.813
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.705
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.712
MDP0000130865 Malus x domestica MDP0000130865 N 0.734
MDP0000217366 Malus x domestica MDP0000217366 N 0.957
MDP0000286430 Malus x domestica MDP0000286430 N 0.734
MDP0000320861 Malus x domestica MDP0000320861 N 0.741
PK00513.1 Cannabis sativa PK00513.1 N 0.871
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.719
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.827
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.813
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.719
ppa005309m Prunus persica ppa005309m N 0.964
ppa005979m Prunus persica ppa005979m N 0.748
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.770