gw1.3.93.1 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.3.93.1 T53253_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.3.93.1 RRM 8 76
gw1.3.93.1 RRM 106 175

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.791
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.791
MDP0000320618 Malus x domestica MDP0000320618 N 0.784
27613.m000635 Ricinus communis 27613.m000635 N 0.784
PK25912.1 Cannabis sativa PK25912.1 N 0.784
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.784
MDP0000907782 Malus x domestica MDP0000907782 N 0.777
ppa004834m Prunus persica ppa004834m N 0.777
ppa005132m Prunus persica ppa005132m N 0.777
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.777
ppa005122m Prunus persica ppa005122m N 0.777
ppa005119m Prunus persica ppa005119m N 0.777
MDP0000204698 Malus x domestica MDP0000204698 N 0.777
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.770
MDP0000642684 Malus x domestica MDP0000642684 N 0.770
MDP0000609551 Malus x domestica MDP0000609551 N 0.770
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.770
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.770
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.770
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.770
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.770
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.770
29608.m000212 Ricinus communis 29608.m000212 N 0.770
MDP0000188788 Malus x domestica MDP0000188788 N 0.770
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.763
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.763
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.763
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.763
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.757
SB02G005670 Sorghum bicolor Sb02g005670 N 0.755
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.755
SB02G005620 Sorghum bicolor Sb02g005620 N 0.755
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.755
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.755
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.755
30048.m000319 Ricinus communis 30048.m000319 N 0.755
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.750
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.748
mgf009385m Mimulus guttatus mgf009385m N 0.748
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.748
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.748
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.748
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.745
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.743
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.741
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.741
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.741
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.741
mgf012147m Mimulus guttatus mgf012147m N 0.741
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.741
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.741
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.741
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.734
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.734
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.734
30008.m000830 Ricinus communis 30008.m000830 N 0.734
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.734
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.734
SB02G037690 Sorghum bicolor Sb02g037690 N 0.734
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.734
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.734
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.734
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.734
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.734
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.727
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.727
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.727
ppa005979m Prunus persica ppa005979m N 0.727
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.727
mgf009486m Mimulus guttatus mgf009486m N 0.721
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.719
PK13457.1 Cannabis sativa PK13457.1 N 0.719
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.719
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.719
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.712
mgf004139m Mimulus guttatus mgf004139m N 0.712
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.712
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.712
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.712
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.712
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.712
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.712
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.712
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.712
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.705
MDP0000173934 Malus x domestica MDP0000173934 N 0.705
ppa005309m Prunus persica ppa005309m N 0.705
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.705
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.705
MDP0000320861 Malus x domestica MDP0000320861 N 0.705
MDP0000286430 Malus x domestica MDP0000286430 N 0.705
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.705
MDP0000130865 Malus x domestica MDP0000130865 N 0.705
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705