CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.3.93.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.3.93.1
T53253_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.3.93.1
RRM
8
76
LFIGGISWETTEEKLKDYFQAYGEVVETVIMRDRTTGRARGFGFVVFSDPNCADRVLLDKHTIDGRVAV
gw1.3.93.1
RRM
106
175
IFVGGLGSNVTEDDFRKYFEQFGTITDVVVMYDHATQRPRGFGFITFDTEEAVDNVLHKTFHELKEKMVE
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.791
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.791
MDP0000320618
Malus x domestica
MDP0000320618
N
0.784
27613.m000635
Ricinus communis
27613.m000635
N
0.784
PK25912.1
Cannabis sativa
PK25912.1
N
0.784
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.784
MDP0000907782
Malus x domestica
MDP0000907782
N
0.777
ppa004834m
Prunus persica
ppa004834m
N
0.777
ppa005132m
Prunus persica
ppa005132m
N
0.777
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.777
ppa005122m
Prunus persica
ppa005122m
N
0.777
ppa005119m
Prunus persica
ppa005119m
N
0.777
MDP0000204698
Malus x domestica
MDP0000204698
N
0.777
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.770
MDP0000642684
Malus x domestica
MDP0000642684
N
0.770
MDP0000609551
Malus x domestica
MDP0000609551
N
0.770
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.770
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.770
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.770
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.770
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.770
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.770
29608.m000212
Ricinus communis
29608.m000212
N
0.770
MDP0000188788
Malus x domestica
MDP0000188788
N
0.770
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.763
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.763
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.763
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.763
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.757
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.755
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.755
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.755
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.755
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.755
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.755
30048.m000319
Ricinus communis
30048.m000319
N
0.755
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.750
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.748
mgf009385m
Mimulus guttatus
mgf009385m
N
0.748
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.748
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.748
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.748
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.745
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.743
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.741
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.741
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.741
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.741
mgf012147m
Mimulus guttatus
mgf012147m
N
0.741
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.741
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.741
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.741
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.734
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.734
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.734
30008.m000830
Ricinus communis
30008.m000830
N
0.734
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.734
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.734
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.734
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.734
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.734
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.734
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.734
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.734
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.727
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.727
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.727
ppa005979m
Prunus persica
ppa005979m
N
0.727
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.727
mgf009486m
Mimulus guttatus
mgf009486m
N
0.721
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.719
PK13457.1
Cannabis sativa
PK13457.1
N
0.719
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.719
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.719
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.712
mgf004139m
Mimulus guttatus
mgf004139m
N
0.712
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.712
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.712
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.712
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.712
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.712
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.712
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.712
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.712
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.705
MDP0000173934
Malus x domestica
MDP0000173934
N
0.705
ppa005309m
Prunus persica
ppa005309m
N
0.705
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.705
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.705
MDP0000320861
Malus x domestica
MDP0000320861
N
0.705
MDP0000286430
Malus x domestica
MDP0000286430
N
0.705
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.705
MDP0000130865
Malus x domestica
MDP0000130865
N
0.705
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.705