RS2Z33 (Arabidopsis thaliana)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		AT2G37340-TAIR-G T07154_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G37340.1-P RRM 13 75
AT2G37340.1-P CCHC ZF 99 116
AT2G37340.1-P CCHC ZF 121 138
AT2G37340.2-P CCHC ZF 69 86
AT2G37340.2-P CCHC ZF 91 108
AT2G37340.3-P RRM 1 34
AT2G37340.3-P CCHC ZF 58 75
AT2G37340.3-P CCHC ZF 80 97

Links

Other CCHC ZF,RRM family RBPs
Other Arabidopsis thaliana RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009671m Prunus persica ppa009671m N 0.707
GRMZM2G083975 Zea mays GRMZM2G083975 N 0.771
mgf016290m Mimulus guttatus mgf016290m N 0.728
mgf009930m Mimulus guttatus mgf009930m N 0.848
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.848
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.859
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.859
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.859
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.848
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.879
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.889
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.917
ppa009294m Prunus persica ppa009294m N 0.859
ppa009074m Prunus persica ppa009074m N 0.848
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.818
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.889
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.889
chr1.CM0033.10.nd Lotus japonicus chr1.CM0033.10.nd N 0.771
AC235022_4 Medicago truncatula AC235022_4 N 0.869
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.944
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.828
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.879
29805.m001527 Ricinus communis 29805.m001527 N 0.869
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.970
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.838
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.798
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.808
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.818
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.808
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.980
PK26144.1 Cannabis sativa PK26144.1 N 0.838
GSVIVG00025580001 Vitis vinifera GSVIVG00025580001 N 0.857
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.879
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.788
SB09G001910 Sorghum bicolor Sb09g001910 N 0.798
SB03G005500 Sorghum bicolor Sb03g005500 N 0.798
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.889
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.914
LOC_Os05g07000 Oryza sativa LOC_Os05g07000 N 0.707
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.818
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.828
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.808
PK05606.1 Cannabis sativa PK05606.1 N 0.789