CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q3SYT9_BOVIN
(
Bos taurus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSBTAG00000020757
T18442_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
1.000
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.957
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.936
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.936
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.883
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000027662
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSBTAP00000027662
KH
99
162
TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
ENSBTAP00000027662
KH
273
335
SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI
ENSBTAP00000038330
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSBTAP00000038330
KH
99
162
TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
ENSBTAP00000038330
KH
255
317
SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI
Links
Other
KH
family RBPs
Other
Bos taurus
RBPs
131 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP1
Dasypus novemcinctus
ENSDNOG00000013200
N
0.000
FUBP1
Echinops telfairi
ENSETEG00000000948
N
0.000