CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q3SYT9_BOVIN
(
Bos taurus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSBTAG00000020757
T18442_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
1.000
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.957
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.936
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.936
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.883
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000027662
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSBTAP00000027662
KH
99
162
TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
ENSBTAP00000027662
KH
273
335
SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI
ENSBTAP00000038330
KH
15
75
TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSBTAP00000038330
KH
99
162
TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQI
ENSBTAP00000038330
KH
255
317
SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI
Links
Other
KH
family RBPs
Other
Bos taurus
RBPs
131 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
snf
Drosophila melanogaster
FBgn0003449
D
0.000
SNRPA
Homo sapiens
ENSG00000077312
D
0.000
GG18748
Drosophila erecta
FBgn0110957
I
0.000
GF21334
Drosophila ananassae
FBgn0098336
I
0.000
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.000
snf
Drosophila mojavensis
FBgn0069598
I
0.000
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.000
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.000
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.000
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.000
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.000
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.000
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.000
GH24608
Drosophila grimshawi
FBgn0132064
I
0.000
GL14287
Drosophila persimilis
FBgn0151892
I
0.000
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.000
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.000
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.000
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.000
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.000
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.000
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.000
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.000
GE16390
Drosophila yakuba
FBgn0233919
I
0.000
GK25839
Drosophila willistoni
FBgn0227798
I
0.000
GJ16850
Drosophila virilis
FBgn0204029
I
0.000
GM12396
Drosophila sechellia
FBgn0167333
I
0.000
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.000
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.000
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.000
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.000
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.000
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.000
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.000
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.000
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.000
AGAP011637
Anopheles gambiae
AGAP011637
I
0.000
AAEL014167
Aedes aegypti
AAEL014167
I
0.000
AAEL002980
Aedes aegypti
AAEL002980
I
0.000
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.000
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.000
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.000
snrpa
Danio rerio
ENSDARG00000018890
I
0.000
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.000
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.000
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.000
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.000
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.000
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.000
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.000
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.000
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.000
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.000
SNRPA
Felis catus
ENSFCAG00000016209
I
0.000
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.000
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.000