PDK_20s1515321g002 (Phoenix dactylifera)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PDK_20s1515321g002 T25230_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1515321g002 PUF 99 133
PDK_20s1515321g002 PUF 135 169
PDK_20s1515321g002 PUF 171 205
PDK_20s1515321g002 PUF 207 241
PDK_20s1515321g002 PUF 243 264
PDK_20s1515321g002 PUF 266 284
PDK_20s1515321g002 PUF 287 317
PDK_20s1515321g002 PUF 338 372

Links

Other PUF family RBPs
Other Phoenix dactylifera RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000627m Prunus persica ppa000627m N 0.705
mgf015234m Mimulus guttatus mgf015234m N 0.701
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.726
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.723
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.727
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.723
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.720
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.720
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.716
mgf015734m Mimulus guttatus mgf015734m N 0.705
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.704
ppa000626m Prunus persica ppa000626m N 0.723
MDP0000776183 Malus x domestica MDP0000776183 N 0.713
MDP0000319167 Malus x domestica MDP0000319167 N 0.705
MDP0000314338 Malus x domestica MDP0000314338 N 0.719
MDP0000191652 Malus x domestica MDP0000191652 N 0.711
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.722
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.726
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.711
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.708
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.712
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.712
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.754
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.734
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.735
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.711
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.711
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.712
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.705
PK21390.1 Cannabis sativa PK21390.1 N 0.722
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.705
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.712
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.708
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.716
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.737
30143.m001164 Ricinus communis 30143.m001164 N 0.745
SB09G001090 Sorghum bicolor Sb09g001090 N 0.708
SB03G039600 Sorghum bicolor Sb03g039600 N 0.754
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.751
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.740
PK00601.1 Cannabis sativa PK00601.1 N 0.738