BRADI2G39240 (Brachypodium distachyon)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BRADI2G39240 T24059_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G39240.1 PUF 552 586
BRADI2G39240.1 PUF 588 622
BRADI2G39240.1 PUF 624 658
BRADI2G39240.1 PUF 660 694
BRADI2G39240.1 PUF 696 730
BRADI2G39240.1 PUF 733 767
BRADI2G39240.1 PUF 769 803
BRADI2G39240.1 PUF 813 845

Links

Other PUF family RBPs
Other Brachypodium distachyon RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 1.000
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.953
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.953
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.946
SB09G001090 Sorghum bicolor Sb09g001090 N 0.942
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.939
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.932
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.932
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.863
30143.m001164 Ricinus communis 30143.m001164 N 0.857
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.853
PK00601.1 Cannabis sativa PK00601.1 N 0.849
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.849
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.846
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.845
ppa000626m Prunus persica ppa000626m N 0.842
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.842
MDP0000314338 Malus x domestica MDP0000314338 N 0.835
SB03G039600 Sorghum bicolor Sb03g039600 N 0.831
MDP0000776183 Malus x domestica MDP0000776183 N 0.828
30143.m001162 Ricinus communis 30143.m001162 N 0.821
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.814
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.814
mgf015234m Mimulus guttatus mgf015234m N 0.813
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.809
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.806
PK21390.1 Cannabis sativa PK21390.1 N 0.806
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.803
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.803
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.803
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.802
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.796
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.795
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.792
ppa000627m Prunus persica ppa000627m N 0.791
mgf015734m Mimulus guttatus mgf015734m N 0.791
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.791
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.789
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.788
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.788
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.788
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.785
MDP0000319167 Malus x domestica MDP0000319167 N 0.784
ppa000731m Prunus persica ppa000731m N 0.774
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.771
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.771
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.771
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.768
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.768
PK01617.1 Cannabis sativa PK01617.1 N 0.768
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.767
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.767
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.766
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.764
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.763
SB04G037410 Sorghum bicolor Sb04g037410 N 0.763
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.763
29595.m000292 Ricinus communis 29595.m000292 N 0.760
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.760
MDP0000176743 Malus x domestica MDP0000176743 N 0.756
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.756
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.756
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.756
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.753
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.753
MDP0000191652 Malus x domestica MDP0000191652 N 0.745
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.743
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.743
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.738
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.734
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.732
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.731
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.724
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.721
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.720
MDP0000119814 Malus x domestica MDP0000119814 N 0.720
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.711
mgf011401m Mimulus guttatus mgf011401m N 0.710