cassava19437.valid.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava19437.valid.m1 T24696_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava19437.valid.m1 PUF 723 757
cassava19437.valid.m1 PUF 759 793
cassava19437.valid.m1 PUF 795 829
cassava19437.valid.m1 PUF 831 865
cassava19437.valid.m1 PUF 867 899
cassava19437.valid.m1 PUF 904 938
cassava19437.valid.m1 PUF 940 974
cassava19437.valid.m1 PUF 987 1016

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.967
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.963
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.963
MDP0000319167 Malus x domestica MDP0000319167 N 0.938
ppa000627m Prunus persica ppa000627m N 0.934
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.931
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.930
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.924
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.920
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.920
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.920
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.917
PK21390.1 Cannabis sativa PK21390.1 N 0.916
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.916
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.912
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.906
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.905
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.902
mgf015734m Mimulus guttatus mgf015734m N 0.901
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.888
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.888
MDP0000191652 Malus x domestica MDP0000191652 N 0.886
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.884
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.880
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.880
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.880
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.859
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.858
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.855
ppa000626m Prunus persica ppa000626m N 0.851
SB03G039600 Sorghum bicolor Sb03g039600 N 0.851
PK00601.1 Cannabis sativa PK00601.1 N 0.848
30143.m001164 Ricinus communis 30143.m001164 N 0.848
MDP0000314338 Malus x domestica MDP0000314338 N 0.847
MDP0000776183 Malus x domestica MDP0000776183 N 0.844
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.844
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.840
mgf015234m Mimulus guttatus mgf015234m N 0.833
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.815
30143.m001162 Ricinus communis 30143.m001162 N 0.808
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.806
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.806
SB09G001090 Sorghum bicolor Sb09g001090 N 0.795
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.795
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.792
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.792
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.791
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.791
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.791
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.788
ppa000731m Prunus persica ppa000731m N 0.786
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.781
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.779
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.775
PK01617.1 Cannabis sativa PK01617.1 N 0.773
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.772
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.768
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.766
29595.m000292 Ricinus communis 29595.m000292 N 0.764
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.761
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.761
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.758
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.757
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.756
mgf011401m Mimulus guttatus mgf011401m N 0.754
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.754
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.750
MDP0000176743 Malus x domestica MDP0000176743 N 0.746
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.745
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.744
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.743
SB04G037410 Sorghum bicolor Sb04g037410 N 0.742
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.735
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.732
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.728
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.721
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.708
MDP0000119814 Malus x domestica MDP0000119814 N 0.707
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.705
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.701