Cucsa.165170 (Cucumis sativus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Cucsa.165170 T24714_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.165170.1 PUF 712 746
Cucsa.165170.1 PUF 748 782
Cucsa.165170.1 PUF 784 819
Cucsa.165170.1 PUF 821 854
Cucsa.165170.1 PUF 856 891
Cucsa.165170.1 PUF 893 927
Cucsa.165170.1 PUF 929 963
Cucsa.165170.1 PUF 976 1005
Cucsa.165170.2 PUF 677 711
Cucsa.165170.2 PUF 713 747
Cucsa.165170.2 PUF 749 784
Cucsa.165170.2 PUF 786 819
Cucsa.165170.2 PUF 821 856
Cucsa.165170.2 PUF 858 892
Cucsa.165170.2 PUF 894 928
Cucsa.165170.2 PUF 941 970
Cucsa.165170.3 PUF 712 746
Cucsa.165170.3 PUF 748 773

Links

Other PUF family RBPs
Other Cucumis sativus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000626m Prunus persica ppa000626m N 0.917
30143.m001164 Ricinus communis 30143.m001164 N 0.913
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.913
PK00601.1 Cannabis sativa PK00601.1 N 0.909
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.906
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.902
MDP0000776183 Malus x domestica MDP0000776183 N 0.895
MDP0000314338 Malus x domestica MDP0000314338 N 0.891
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.888
30143.m001162 Ricinus communis 30143.m001162 N 0.870
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.861
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.861
mgf015234m Mimulus guttatus mgf015234m N 0.859
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.859
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.857
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.857
SB09G001090 Sorghum bicolor Sb09g001090 N 0.853
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.849
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.849
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.849
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.846
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.844
SB03G039600 Sorghum bicolor Sb03g039600 N 0.844
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.833
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.830
PK21390.1 Cannabis sativa PK21390.1 N 0.830
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.826
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.826
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.822
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.822
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.822
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.822
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.822
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.822
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.822
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.822
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.819
MDP0000319167 Malus x domestica MDP0000319167 N 0.819
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.815
ppa000627m Prunus persica ppa000627m N 0.815
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.808
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.804
mgf015734m Mimulus guttatus mgf015734m N 0.804
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.797
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.790
PK01617.1 Cannabis sativa PK01617.1 N 0.787
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.786
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.786
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.786
ppa000731m Prunus persica ppa000731m N 0.783
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.783
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.780
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.780
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.780
29595.m000292 Ricinus communis 29595.m000292 N 0.776
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.773
MDP0000176743 Malus x domestica MDP0000176743 N 0.769
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.765
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.765
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.759
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.758
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.758
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.757
MDP0000191652 Malus x domestica MDP0000191652 N 0.757
SB04G037410 Sorghum bicolor Sb04g037410 N 0.755
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.751
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.751
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.747
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.747
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.744
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.740
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.732
mgf011401m Mimulus guttatus mgf011401m N 0.729
MDP0000119814 Malus x domestica MDP0000119814 N 0.726
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.726
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.724
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.718
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.716