SB09G001090 (Sorghum bicolor)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Sb09g001090 T24456_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb09g001090.1 PUF 542 576
Sb09g001090.1 PUF 578 612
Sb09g001090.1 PUF 614 648
Sb09g001090.1 PUF 650 684
Sb09g001090.1 PUF 686 720
Sb09g001090.1 PUF 723 757
Sb09g001090.1 PUF 759 792
Sb09g001090.1 PUF 803 835

Links

Other PUF family RBPs
Other Sorghum bicolor RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.996
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.978
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.968
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.968
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.953
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.953
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.942
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.942
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.863
30143.m001164 Ricinus communis 30143.m001164 N 0.860
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.856
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.853
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.853
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.849
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.846
ppa000626m Prunus persica ppa000626m N 0.846
MDP0000314338 Malus x domestica MDP0000314338 N 0.845
PK00601.1 Cannabis sativa PK00601.1 N 0.842
SB03G039600 Sorghum bicolor Sb03g039600 N 0.841
MDP0000776183 Malus x domestica MDP0000776183 N 0.839
mgf015234m Mimulus guttatus mgf015234m N 0.824
30143.m001162 Ricinus communis 30143.m001162 N 0.817
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.814
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.806
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.806
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.806
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.803
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.803
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.803
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.803
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.799
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.799
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.795
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.795
PK21390.1 Cannabis sativa PK21390.1 N 0.795
ppa000627m Prunus persica ppa000627m N 0.795
MDP0000319167 Malus x domestica MDP0000319167 N 0.795
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.795
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.795
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.792
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.791
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.785
mgf015734m Mimulus guttatus mgf015734m N 0.781
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.774
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.771
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.771
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.767
ppa000731m Prunus persica ppa000731m N 0.767
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.767
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.760
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.759
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.757
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.756
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.756
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.756
PK01617.1 Cannabis sativa PK01617.1 N 0.754
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.754
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.750
SB04G037410 Sorghum bicolor Sb04g037410 N 0.749
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.749
MDP0000191652 Malus x domestica MDP0000191652 N 0.748
29595.m000292 Ricinus communis 29595.m000292 N 0.746
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.746
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.743
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.742
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.742
MDP0000176743 Malus x domestica MDP0000176743 N 0.738
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.738
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.736
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.732
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.731
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.727
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.724
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.721
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.720
mgf011401m Mimulus guttatus mgf011401m N 0.717
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.708
MDP0000119814 Malus x domestica MDP0000119814 N 0.706