PK00601.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK00601.1 T23976_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK00601.1 PUF 728 762
PK00601.1 PUF 764 798
PK00601.1 PUF 800 834
PK00601.1 PUF 837 870
PK00601.1 PUF 872 907
PK00601.1 PUF 909 943
PK00601.1 PUF 945 979
PK00601.1 PUF 992 1021

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.957
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.946
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.942
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.931
ppa000626m Prunus persica ppa000626m N 0.920
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.913
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.909
30143.m001162 Ricinus communis 30143.m001162 N 0.906
MDP0000314338 Malus x domestica MDP0000314338 N 0.906
MDP0000776183 Malus x domestica MDP0000776183 N 0.906
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.873
mgf015234m Mimulus guttatus mgf015234m N 0.870
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.862
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.862
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.859
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.859
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.859
PK21390.1 Cannabis sativa PK21390.1 N 0.859
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.859
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.855
mgf015734m Mimulus guttatus mgf015734m N 0.855
ppa000627m Prunus persica ppa000627m N 0.855
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.855
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.853
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.853
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.851
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.851
SB03G039600 Sorghum bicolor Sb03g039600 N 0.851
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.849
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.849
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.848
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.848
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.848
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.848
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.846
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.846
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.844
SB09G001090 Sorghum bicolor Sb09g001090 N 0.842
MDP0000319167 Malus x domestica MDP0000319167 N 0.841
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.841
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.839
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.837
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.835
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.822
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.812
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.812
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.812
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.808
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.804
PK01617.1 Cannabis sativa PK01617.1 N 0.801
MDP0000191652 Malus x domestica MDP0000191652 N 0.801
ppa000731m Prunus persica ppa000731m N 0.794
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.791
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.791
29595.m000292 Ricinus communis 29595.m000292 N 0.787
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.783
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.783
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.780
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.777
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.776
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.775
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.769
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.769
MDP0000176743 Malus x domestica MDP0000176743 N 0.765
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.755
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.751
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.749
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.747
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.747
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.744
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.744
SB04G037410 Sorghum bicolor Sb04g037410 N 0.744
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.743
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.740
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.738
MDP0000119814 Malus x domestica MDP0000119814 N 0.736
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.736
mgf011401m Mimulus guttatus mgf011401m N 0.729