Medtr2g117180 (Medicago truncatula)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Medtr2g117180 T24973_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g117180.1 PUF 712 746
Medtr2g117180.1 PUF 748 781
Medtr2g117180.1 PUF 784 818
Medtr2g117180.1 PUF 820 854
Medtr2g117180.1 PUF 856 888
Medtr2g117180.1 PUF 893 927
Medtr2g117180.1 PUF 929 963
Medtr2g117180.1 PUF 976 1005
Medtr2g117180.2 PUF 1 27
Medtr2g117180.2 PUF 40 69

Links

Other PUF family RBPs
Other Medicago truncatula RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.952
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.942
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.938
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.938
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.935
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.935
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.935
PK21390.1 Cannabis sativa PK21390.1 N 0.927
ppa000627m Prunus persica ppa000627m N 0.926
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.916
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.916
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.916
MDP0000319167 Malus x domestica MDP0000319167 N 0.912
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.905
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.905
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.891
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.887
mgf015734m Mimulus guttatus mgf015734m N 0.886
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.870
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.865
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.865
MDP0000191652 Malus x domestica MDP0000191652 N 0.864
SB03G039600 Sorghum bicolor Sb03g039600 N 0.862
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.859
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.859
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.858
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.858
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.858
30143.m001164 Ricinus communis 30143.m001164 N 0.851
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.851
PK00601.1 Cannabis sativa PK00601.1 N 0.848
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.848
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.847
ppa000626m Prunus persica ppa000626m N 0.844
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.844
MDP0000314338 Malus x domestica MDP0000314338 N 0.833
MDP0000776183 Malus x domestica MDP0000776183 N 0.830
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.822
30143.m001162 Ricinus communis 30143.m001162 N 0.812
mgf015234m Mimulus guttatus mgf015234m N 0.804
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.796
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.796
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.795
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.795
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.791
SB09G001090 Sorghum bicolor Sb09g001090 N 0.791
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.789
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.789
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.788
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.785
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.784
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.783
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.782
29595.m000292 Ricinus communis 29595.m000292 N 0.778
PK01617.1 Cannabis sativa PK01617.1 N 0.776
ppa000731m Prunus persica ppa000731m N 0.775
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.775
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.766
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.757
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.756
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.754
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.751
MDP0000176743 Malus x domestica MDP0000176743 N 0.750
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.745
mgf011401m Mimulus guttatus mgf011401m N 0.743
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.743
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.743
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.742
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
SB04G037410 Sorghum bicolor Sb04g037410 N 0.738
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.736
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.735
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.728
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.726
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.724
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.717
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.710
MDP0000119814 Malus x domestica MDP0000119814 N 0.703