MDP0000776183 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000776183 T25208_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000776183 PUF 679 713
MDP0000776183 PUF 715 749
MDP0000776183 PUF 751 785
MDP0000776183 PUF 787 821
MDP0000776183 PUF 823 858
MDP0000776183 PUF 860 893
MDP0000776183 PUF 896 930
MDP0000776183 PUF 943 972

Links

Other PUF family RBPs
Other Malus x domestica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000314338 Malus x domestica MDP0000314338 N 0.978
ppa000626m Prunus persica ppa000626m N 0.964
30143.m001164 Ricinus communis 30143.m001164 N 0.931
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.924
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.917
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.917
PK00601.1 Cannabis sativa PK00601.1 N 0.906
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.899
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.895
30143.m001162 Ricinus communis 30143.m001162 N 0.884
mgf015234m Mimulus guttatus mgf015234m N 0.866
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.862
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.858
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.855
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.848
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.848
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.848
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.848
PK21390.1 Cannabis sativa PK21390.1 N 0.848
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.848
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.846
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.846
SB03G039600 Sorghum bicolor Sb03g039600 N 0.844
MDP0000319167 Malus x domestica MDP0000319167 N 0.844
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.844
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.844
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.841
ppa000627m Prunus persica ppa000627m N 0.841
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.841
SB09G001090 Sorghum bicolor Sb09g001090 N 0.839
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.837
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.836
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.836
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.835
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.833
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.833
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.832
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.830
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.830
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.830
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.828
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.828
mgf015734m Mimulus guttatus mgf015734m N 0.826
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.822
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.812
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.812
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.812
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.808
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.808
MDP0000191652 Malus x domestica MDP0000191652 N 0.793
PK01617.1 Cannabis sativa PK01617.1 N 0.791
ppa000731m Prunus persica ppa000731m N 0.791
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.783
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.773
29595.m000292 Ricinus communis 29595.m000292 N 0.773
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.772
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.770
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.765
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.762
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.758
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.758
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.758
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.755
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.755
MDP0000176743 Malus x domestica MDP0000176743 N 0.747
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.744
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.742
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.740
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.739
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.736
SB04G037410 Sorghum bicolor Sb04g037410 N 0.736
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.736
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.733
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.726
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.726
MDP0000119814 Malus x domestica MDP0000119814 N 0.722
mgf011401m Mimulus guttatus mgf011401m N 0.718
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.713