PK21390.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK21390.1 T23987_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK21390.1 PUF 731 765
PK21390.1 PUF 768 800
PK21390.1 PUF 803 837
PK21390.1 PUF 839 873
PK21390.1 PUF 875 909
PK21390.1 PUF 912 946
PK21390.1 PUF 948 982
PK21390.1 PUF 995 1024

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.949
ppa000627m Prunus persica ppa000627m N 0.949
MDP0000319167 Malus x domestica MDP0000319167 N 0.934
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.928
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.927
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.927
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.927
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.927
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.924
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.924
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.924
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.924
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.923
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.916
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.916
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.916
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.891
MDP0000191652 Malus x domestica MDP0000191652 N 0.883
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.880
mgf015734m Mimulus guttatus mgf015734m N 0.880
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.876
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.872
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.872
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.870
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.870
30143.m001164 Ricinus communis 30143.m001164 N 0.870
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.869
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.865
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.865
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.862
ppa000626m Prunus persica ppa000626m N 0.862
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.862
SB03G039600 Sorghum bicolor Sb03g039600 N 0.862
PK00601.1 Cannabis sativa PK00601.1 N 0.859
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.855
MDP0000314338 Malus x domestica MDP0000314338 N 0.855
MDP0000776183 Malus x domestica MDP0000776183 N 0.848
30143.m001162 Ricinus communis 30143.m001162 N 0.830
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.830
mgf015234m Mimulus guttatus mgf015234m N 0.829
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.806
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.806
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.806
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.806
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.796
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.796
SB09G001090 Sorghum bicolor Sb09g001090 N 0.795
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.791
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.789
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.788
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.786
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.779
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.778
PK01617.1 Cannabis sativa PK01617.1 N 0.773
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.773
ppa000731m Prunus persica ppa000731m N 0.772
29595.m000292 Ricinus communis 29595.m000292 N 0.771
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.761
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.756
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.756
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.755
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.750
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.747
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.743
MDP0000176743 Malus x domestica MDP0000176743 N 0.743
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.743
SB04G037410 Sorghum bicolor Sb04g037410 N 0.743
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.739
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.737
mgf011401m Mimulus guttatus mgf011401m N 0.736
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.733
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.732
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.728
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.725
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.722
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.717
MDP0000119814 Malus x domestica MDP0000119814 N 0.703